RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ADAM12O43184 909 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 PTPN2P17706 415 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 VIPR2P41587 438 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 DRP2Q13474 957 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 RAB33AQ14088 237 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 UBXN11Q5T124 520 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 PMS2CLQ68D20 193 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 ZNF410Q86VK4 478 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 KRT23Q9C075 422 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 MIOSQ9NXC5 875 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 NCANO14594 1321 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 CHADO15335 359 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 ATG13O75143 517 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 NTRK1P04629 796 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 HNRNPDQ14103 355 aaKnown RBP18.23■□□□□ 0.51
VPS53-218ENST00000575207 PON2Q15165 354 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 PSMD5Q16401 504 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 EVI5LQ96CN4 794 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 TCEAL4Q96EI5 215 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 RRP36Q96EU6 259 aaKnown RBP18.23■□□□□ 0.51
VPS53-218ENST00000575207 TTPALQ9BTX7 342 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 DCTPP1Q9H773 170 aa18.23■□□□□ 0.51
VPS53-218ENST00000575207 ANKRD17O75179 2603 aaKnown RBP18.23■□□□□ 0.51
VPS53-218ENST00000575207 SPTAN1Q13813 2472 aaKnown RBP18.23■□□□□ 0.51
VPS53-218ENST00000575207 SF3B1O75533 1304 aaKnown RBP eCLIP18.23■□□□□ 0.51
VPS53-218ENST00000575207 KCNC4Q03721 635 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 TICAM2Q86XR7 235 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 SMG8Q8ND04 991 aaKnown RBP18.22■□□□□ 0.51
VPS53-218ENST00000575207 CNNM3Q8NE01 707 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 FAM200AQ8TCP9 573 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 ZSWIM3Q96MP5 696 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 GAD1Q99259 594 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 SPZ1Q9BXG8 430 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 ATMQ13315 3056 aa18.22■□□□□ 0.51
VPS53-218ENST00000575207 ZNF197O14709 1029 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 MS4A1P11836 297 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 ITGA4P13612 1032 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 MLH1P40692 756 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 SCNN1GP51170 649 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 FCHO2Q0JRZ9 810 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 ZNF746Q6NUN9 644 aaPredicted RBP18.21■□□□□ 0.51
VPS53-218ENST00000575207 CYP2U1Q7Z449 544 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 SMAP1Q8IYB5 467 aaPredicted RBP18.21■□□□□ 0.51
VPS53-218ENST00000575207 OTUD7AQ8TE49 926 aaPredicted RBP18.21■□□□□ 0.51
VPS53-218ENST00000575207 CNNM2Q9H8M5 875 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 NRBP2Q9NSY0 501 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 GABBR1Q9UBS5 961 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 EBF1Q9UH73 591 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 PCDHA10Q9Y5I2 948 aa18.21■□□□□ 0.51
VPS53-218ENST00000575207 PTPRQQ9UMZ3 2332 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 HEPACAM2A8MVW5 462 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 CAPN9O14815 690 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 TADA2AO75478 443 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 PSAPP07602 524 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 HOXA11P31270 313 aaPredicted RBP18.2■□□□□ 0.5
VPS53-218ENST00000575207 ABCG1P45844 678 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 MAPK8P45983 427 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 SPIRE1Q08AE8 756 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 NIPA1Q7RTP0 329 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 C11orf74Q86VG3 221 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 E2F7Q96AV8 911 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 ZFP42Q96MM3 310 aa18.2■□□□□ 0.5
VPS53-218ENST00000575207 CHMP4BQ9H444 224 aaKnown RBP18.2■□□□□ 0.5
VPS53-218ENST00000575207 SEC63Q9UGP8 760 aaKnown RBP18.2■□□□□ 0.5
VPS53-218ENST00000575207 ARHGEF37A1IGU5 675 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 OATP04181 439 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 SMARCA1P28370 1054 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 GBP1P32455 592 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 CCR2P41597 374 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 TARBP2Q15633 366 aaKnown RBP18.19■□□□□ 0.5
VPS53-218ENST00000575207 TRIM61Q5EBN2 209 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 NUSAP1Q9BXS6 441 aaKnown RBP18.19■□□□□ 0.5
VPS53-218ENST00000575207 PRORYQ9H606 182 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 VWA8A3KMH1 1905 aa18.19■□□□□ 0.5
VPS53-218ENST00000575207 MGAQ8IWI9 3026 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 IGKV6-21A0A0C4DH24 114 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 ENGP17813 658 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 OR1D2P34982 312 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 PI4KAP42356 2102 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 CFHR1Q03591 330 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 NMIQ13287 307 aaPredicted RBP18.18■□□□□ 0.5
VPS53-218ENST00000575207 FAM171A1Q5VUB5 890 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 GSTCDQ8NEC7 633 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 CORO1BQ9BR76 489 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 RNF39Q9H2S5 420 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 GON4LQ3T8J9 2241 aa18.18■□□□□ 0.5
VPS53-218ENST00000575207 TDRD15B5MCY1 1934 aaKnown RBP18.17■□□□□ 0.5
VPS53-218ENST00000575207 THADAQ6YHU6 1953 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 IPO5O00410 1097 aaKnown RBP18.17■□□□□ 0.5
VPS53-218ENST00000575207 CYB5R4Q7L1T6 521 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 CEP57Q86XR8 500 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 YAF2Q8IY57 180 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 ZSCAN18Q8TBC5 510 aaPredicted RBP18.17■□□□□ 0.5
VPS53-218ENST00000575207 PIGKQ92643 395 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 RSPRY1Q96DX4 576 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 HHIPQ96QV1 700 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 IFT122Q9HBG6 1241 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 IPPQ9Y573 584 aa18.17■□□□□ 0.5
VPS53-218ENST00000575207 MOSPD3O75425 235 aa18.16■□□□□ 0.5
VPS53-218ENST00000575207 MX1P20591 662 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms