RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FSCN2O14926 492 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 CALCAP01258 141 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 DLATP10515 647 aaKnown RBP24.4■■□□□ 1.5
VPS53-211ENST00000571805 GCNT1Q02742 428 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 GPD1LQ8N335 351 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 GPRASP2Q96D09 838 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 GINM1Q9NU53 330 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 PTPN22Q9Y2R2 807 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 KIAA1217Q5T5P2 1943 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 NR3C2P08235 984 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 ENPEPQ07075 957 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 ERMARDQ5T6L9 678 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 CYFIP1Q7L576 1253 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 USP37Q86T82 979 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 ATG4CQ96DT6 458 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 PI4K2AQ9BTU6 479 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 TMEM109Q9BVC6 243 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 TELO2Q9Y4R8 837 aa24.4■■□□□ 1.5
VPS53-211ENST00000571805 EGFRP00533 1210 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 GARTP22102 1010 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 CCND2P30279 289 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 AEBP2Q6ZN18 517 aaPredicted RBP24.39■■□□□ 1.5
VPS53-211ENST00000571805 C15orf39Q6ZRI6 1047 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 TAS1R3Q7RTX0 852 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 ADAM7Q9H2U9 754 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 XPNPEP1Q9NQW7 623 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 RNF146Q9NTX7 359 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 CAPN7Q9Y6W3 813 aa24.39■■□□□ 1.5
VPS53-211ENST00000571805 CLDN3O15551 220 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 UNGP13051 313 aaPredicted RBP24.39■■□□□ 1.49
VPS53-211ENST00000571805 RARGP13631 454 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 KCNA2P16389 499 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 MMP13P45452 471 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 BRDTQ58F21 947 aaPredicted RBP24.39■■□□□ 1.49
VPS53-211ENST00000571805 ZNF516Q92618 1163 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 FAM84AQ96KN4 292 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 PASKQ96RG2 1323 aa24.39■■□□□ 1.49
VPS53-211ENST00000571805 RGS20O76081 388 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 KRT5P13647 590 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 SLMAPQ14BN4 828 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 FBXW10Q5XX13 1052 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 ENOSF1Q7L5Y1 443 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 SLCO2A1Q92959 643 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 SEC16BQ96JE7 1060 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 XPO6Q96QU8 1125 aaKnown RBP24.38■■□□□ 1.49
VPS53-211ENST00000571805 FAM213AQ9BRX8 229 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 AZI2Q9H6S1 392 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 TLDC2A0PJX2 215 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 HNRNPDLO14979 420 aaKnown RBP24.38■■□□□ 1.49
VPS53-211ENST00000571805 MAFGO15525 162 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 RIPK2O43353 540 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 ZC3H11AO75152 810 aaKnown RBP eCLIP24.38■■□□□ 1.49
VPS53-211ENST00000571805 FDX1P10109 184 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 RTP1P59025 263 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 C6orf118Q5T5N4 469 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 RNF187Q5TA31 235 aaPredicted RBP24.38■■□□□ 1.49
VPS53-211ENST00000571805 CNPY4Q8N129 248 aa24.38■■□□□ 1.49
VPS53-211ENST00000571805 TP73O15350 636 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 DRD4P21917 467 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 FGFR4P22455 802 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 IFI35P80217 286 aaPredicted RBP24.37■■□□□ 1.49
VPS53-211ENST00000571805 CIAPIN1Q6FI81 312 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 SWSAP1Q6NVH7 229 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 MCOLN2Q8IZK6 566 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 ATP6V0A1Q93050 837 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 TAOK3Q9H2K8 898 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 DOCK5Q9H7D0 1870 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 DGAT1O75907 488 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 ECEL1O95672 775 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 CDR1P51861 262 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 ADCY2Q08462 1091 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 ZNF568Q3ZCX4 644 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 MYPNQ86TC9 1320 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 BBXQ8WY36 941 aaPredicted RBP24.37■■□□□ 1.49
VPS53-211ENST00000571805 CAMKK2Q96RR4 588 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 FAM129AQ9BZQ8 928 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 TRIM7Q9C029 511 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 ANAPC7Q9UJX3 599 aa24.37■■□□□ 1.49
VPS53-211ENST00000571805 MROH7Q68CQ1 1323 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 RGS16O15492 202 aaPredicted RBP24.36■■□□□ 1.49
VPS53-211ENST00000571805 SCP2P22307 547 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 MAPK4P31152 587 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 CLDN10P78369 228 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 EN1Q05925 392 aaPredicted RBP24.36■■□□□ 1.49
VPS53-211ENST00000571805 TNFAIP8L3Q5GJ75 292 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 ARMC9Q7Z3E5 817 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 MCPH1Q8NEM0 835 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 C1orf54Q8WWF1 131 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 AVENQ9NQS1 362 aaPredicted RBP24.36■■□□□ 1.49
VPS53-211ENST00000571805 ARHGAP28Q9P2N2 729 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 RLFQ13129 1914 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 AGTP01019 485 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 CHN1P15882 459 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 TNFAIP1Q13829 316 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 LLGL1Q15334 1064 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 MMS22LQ6ZRQ5 1243 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 CROCCP2Q86T23 111 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 REPS2Q8NFH8 660 aa24.36■■□□□ 1.49
VPS53-211ENST00000571805 UHMK1Q8TAS1 419 aaKnown RBP24.36■■□□□ 1.49
VPS53-211ENST00000571805 COL11A1P12107 1806 aaPredicted RBP24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms