RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KCNE1P15382 129 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ERCC5P28715 1186 aaPredicted RBP10.12□□□□□ -0.79
VPS35-211ENST00000569950 MLH1P40692 756 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 SCNN1GP51170 649 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 CYP2J2P51589 502 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 CLDN10P78369 228 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 POU5F1Q01860 360 aaKnown RBP10.12□□□□□ -0.79
VPS35-211ENST00000569950 LRRC63Q05C16 580 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 DSC1Q08554 894 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 PAK1Q13153 545 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 MYBPC2Q14324 1141 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 SNRNP35Q16560 246 aaKnown RBP10.12□□□□□ -0.79
VPS35-211ENST00000569950 KLHL10Q6JEL2 608 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 FAM117BQ6P1L5 589 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ARMCX5Q6P1M9 558 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 CD300LGQ6UXG3 332 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ZNF280BQ86YH2 543 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 GPD1LQ8N335 351 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 XXYLT1Q8NBI6 393 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ZNF516Q92618 1163 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ADPGKQ9BRR6 497 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 FAM213AQ9BRX8 229 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 TCHPQ9BT92 498 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 APOL6Q9BWW8 343 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 PBX4Q9BYU1 374 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 TMEM117Q9H0C3 514 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 DNAJC25Q9H1X3 360 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 RSAD1Q9HA92 442 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 TBC1D13Q9NVG8 400 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 CACNG4Q9UBN1 327 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 RWDD2AQ9UIY3 292 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 GIT1Q9Y2X7 761 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 EYSQ5T1H1 3165 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 SMIM28A0A1B0GU29 152 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 F8W810 466 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 PSMA7O14818 248 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 KIAA0391O15091 583 aaKnown RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 MAPK13O15264 365 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 NFICP08651 508 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 SKIP12755 728 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 NR2F2P24468 414 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 KCNJ6P48051 423 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 DLG4P78352 724 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 SPAG1Q07617 926 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 CYP24A1Q07973 514 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 NCBP1Q09161 790 aaKnown RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 IQCB1Q15051 598 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 STX1AQ16623 288 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 LRIT3Q3SXY7 679 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 ANO6Q4KMQ2 910 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 GLRA4Q5JXX5 417 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 HS2ST1Q7LGA3 356 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 TMEM173Q86WV6 379 aaPredicted RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 RNF169Q8NCN4 708 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 GOLGA5Q8TBA6 731 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 BCL7CQ8WUZ0 217 aaPredicted RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 C18orf25Q96B23 403 aaPredicted RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 ACAP3Q96P50 834 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 PAAF1Q9BRP4 392 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 PDE11AQ9HCR9 933 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 TOPORSQ9NS56 1045 aaPredicted RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 DNAJB4Q9UDY4 337 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 PCDHB7Q9Y5E2 793 aa10.11□□□□□ -0.79
VPS35-211ENST00000569950 MRPL42Q9Y6G3 142 aaKnown RBP10.11□□□□□ -0.79
VPS35-211ENST00000569950 A0A1W2PPC1 479 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 LINC01553A4QN01 128 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 LRRIQ3A6PVS8 624 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 TBKBP1A7MCY6 615 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 PPEF2O14830 753 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 POMCP01189 267 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 ZNF18P17022 549 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 IBSPP21815 317 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 PPP1R2P41236 205 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 GUCY2FP51841 1108 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 MARSP56192 900 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 ZNF445P59923 1031 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 ADAM9Q13443 819 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 PSMD6Q15008 389 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 TMEM132AQ24JP5 1023 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 NOMO2Q5JPE7 1267 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 CT47A1Q5JQC4 288 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 CDKAL1Q5VV42 579 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 JADE1Q6IE81 842 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 C15orf39Q6ZRI6 1047 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 APTXQ7Z2E3 356 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 DHX40Q8IX18 779 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 COLGALT2Q8IYK4 626 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 CMTR2Q8IYT2 770 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 C3orf58Q8NDZ4 430 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 OR5B17Q8NGF7 314 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 PARD3BQ8TEW8 1205 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 CLP1Q92989 425 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 SYAP1Q96A49 352 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 PGBD4Q96DM1 585 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 POP1Q99575 1024 aaKnown RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 RAD9AQ99638 391 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 CCDC94Q9BW85 323 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 VN1R3Q9BXE9 311 aa10.1□□□□□ -0.79
VPS35-211ENST00000569950 TRIM6Q9C030 488 aaPredicted RBP10.1□□□□□ -0.79
VPS35-211ENST00000569950 NRDE2Q9H7Z3 1164 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms