RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SPIRE2Q8WWL2 714 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 ADAM7Q9H2U9 754 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 RRP1BQ14684 758 aaKnown RBP15.45■□□□□ 0.06
VPS35-210ENST00000568784 SUPT20HQ8NEM7 779 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 SPOCK2Q92563 424 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 RMDN2Q96LZ7 410 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 SEL1LQ9UBV2 794 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 HAO1Q9UJM8 370 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 ZMYM2Q9UBW7 1377 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.45■□□□□ 0.06
VPS35-210ENST00000568784 POTEJP0CG39 1038 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 RRM1P23921 792 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 ALDH3A1P30838 453 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 MSH2P43246 934 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 LRRC8CQ8TDW0 803 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 TMEM206Q9H813 350 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 USP21Q9UK80 565 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 IRS2Q9Y4H2 1338 aa15.45■□□□□ 0.06
VPS35-210ENST00000568784 MGRN1O60291 552 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 CYP11B1P15538 503 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 STRN3Q13033 797 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 BMT2Q1RMZ1 405 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 ZNF394Q53GI3 561 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 ANKMY2Q8IV38 441 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 ATP6V0A4Q9HBG4 840 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 C1orf112Q9NSG2 853 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 NAALADL1Q9UQQ1 740 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 KRT10P13645 584 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 SNRNP35Q16560 246 aaKnown RBP15.44■□□□□ 0.06
VPS35-210ENST00000568784 RFX8Q6ZV50 586 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 TRMT10CQ7L0Y3 403 aaKnown RBP15.44■□□□□ 0.06
VPS35-210ENST00000568784 CENPTQ96BT3 561 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 RBM15Q96T37 977 aaKnown RBP eCLIP15.44■□□□□ 0.06
VPS35-210ENST00000568784 FAM213AQ9BRX8 229 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 KIF9Q9HAQ2 790 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 SLCO1B3Q9NPD5 702 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 MRPL11Q9Y3B7 192 aaKnown RBP15.44■□□□□ 0.06
VPS35-210ENST00000568784 CCDC88AQ3V6T2 1871 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 WDR44Q5JSH3 913 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 FAM182AQ5T1J6 154 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 MOXD1Q6UVY6 613 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 CYP4X1Q8N118 509 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 FITM2Q8N6M3 262 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 GPR88Q9GZN0 384 aa15.44■□□□□ 0.06
VPS35-210ENST00000568784 KIF22Q14807 665 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 P3H1Q32P28 736 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 ANKRD35Q8N283 1001 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 A1CFQ9NQ94 594 aaKnown RBP15.43■□□□□ 0.06
VPS35-210ENST00000568784 R3HDM2Q9Y2K5 976 aaKnown RBP15.43■□□□□ 0.06
VPS35-210ENST00000568784 C15orf41Q9Y2V0 281 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 DENND3A2RUS2 1198 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 TTC4O95801 387 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 C11orf63Q6NUN7 778 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 PIGWQ7Z7B1 504 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 ZC3H3Q8IXZ2 948 aaKnown RBP15.43■□□□□ 0.06
VPS35-210ENST00000568784 GRK7Q8WTQ7 553 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 PCYOX1Q9UHG3 505 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 PLS3P13797 630 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 ATP2A2P16615 1042 aaKnown RBP15.43■□□□□ 0.06
VPS35-210ENST00000568784 RAD23BP54727 409 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 KRT39Q6A163 491 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 AGBL1Q96MI9 1066 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 KREMEN1Q96MU8 473 aa15.43■□□□□ 0.06
VPS35-210ENST00000568784 CNOT7Q9UIV1 285 aaKnown RBP15.43■□□□□ 0.06
VPS35-210ENST00000568784 ADRB2P07550 413 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 ZSCAN5DPP0CG00 497 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 OVGP1Q12889 678 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 NAIF1Q69YI7 327 aaPredicted RBP15.42■□□□□ 0.06
VPS35-210ENST00000568784 DCUN1D2Q6PH85 259 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 DPH6Q7L8W6 267 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 SEMA4DQ92854 862 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 LRRC37BQ96QE4 947 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 SMC6Q96SB8 1091 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 LRRC4BQ9NT99 713 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 CHURC1Q8WUH1 139 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 RPS6KC1Q96S38 1066 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 KMT5AQ9NQR1 393 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 NINJ2Q9NZG7 142 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 FAM198AQ9UFP1 575 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 GTF3C4Q9UKN8 822 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 ZHX2Q9Y6X8 837 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 O00370 1275 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 PSMD10O75832 226 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 JAG1P78504 1218 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 FMO1Q01740 532 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 LDHDQ86WU2 507 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 ZBED8Q8IZ13 594 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 GBP7Q8N8V2 638 aaPredicted RBP15.42■□□□□ 0.06
VPS35-210ENST00000568784 ART4Q93070 314 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 TCHPQ9BT92 498 aa15.42■□□□□ 0.06
VPS35-210ENST00000568784 A0A0G2JND7 137 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SGK1O00141 431 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
VPS35-210ENST00000568784 GSTA1P08263 222 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 ITIH2P19823 946 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 GPS1Q13098 491 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SPOPLQ6IQ16 392 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 BTNL9Q6UXG8 535 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 FBXL13Q8NEE6 735 aa15.41■□□□□ 0.06
VPS35-210ENST00000568784 SEC14L1Q92503 715 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms