RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CCT2P78371 535 aaKnown RBP3.98□□□□□ -1.77
VPS35-207ENST00000568191 FAM189BP81408 668 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 TMPRSS15P98073 1019 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RESTQ13127 1097 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 STAT4Q14765 748 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 NOMO1Q15155 1222 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 ADRM1Q16186 407 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 PDCD4Q53EL6 469 aaKnown RBP3.98□□□□□ -1.77
VPS35-207ENST00000568191 MFSD14BQ5SR56 506 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RNF219Q5W0B1 726 aaPredicted RBP3.98□□□□□ -1.77
VPS35-207ENST00000568191 TSHZ3Q63HK5 1081 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 MED25Q71SY5 747 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RHOT2Q8IXI1 618 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 AMOTL1Q8IY63 956 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 FAM43AQ8N2R8 423 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 ATL2Q8NHH9 583 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 WDR66Q8TBY9 1149 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 TGFBRAP1Q8WUH2 860 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 LMBR1Q8WVP7 490 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 CEP95Q96GE4 821 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 RNPEPQ9H4A4 650 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 PRDM12Q9H4Q4 367 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 MANSC1Q9H8J5 431 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 TESQ9UGI8 421 aaKnown RBP3.98□□□□□ -1.77
VPS35-207ENST00000568191 PRKAB1Q9Y478 270 aa3.98□□□□□ -1.77
VPS35-207ENST00000568191 PIPSLA2A3N6 862 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 CXorf49A8MYA2 514 aaPredicted RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 ZNF185O15231 689 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 LPXNO60711 386 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 CDKL5O76039 1030 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 GSPT1P15170 499 aaKnown RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 TGM1P22735 817 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 CREMQ03060 361 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 MALLQ13021 153 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 TOR2AQ5JU69 321 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 FAM102AQ5T9C2 384 aaPredicted RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 PCSK4Q6UW60 755 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 Q6YL49 198 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 SPATS2Q86XZ4 545 aaKnown RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 SYT12Q8IV01 421 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 MAPKAPK5Q8IW41 473 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 TRMT2AQ8IZ69 625 aaKnown RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 BEND2Q8NDZ0 799 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 OR56A1Q8NGH5 318 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 FUBP3Q96I24 572 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS35-207ENST00000568191 MRI1Q9BV20 369 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 TBCCD1Q9NVR7 557 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 PTGFRNQ9P2B2 879 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 SAP30BPQ9UHR5 308 aaKnown RBP3.97□□□□□ -1.77
VPS35-207ENST00000568191 DMTF1Q9Y222 760 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 INSL6Q9Y581 213 aa3.97□□□□□ -1.77
VPS35-207ENST00000568191 GRID2IPA4D2P6 1211 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 CFIP05156 583 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 ALOX15P16050 662 aaPredicted RBP3.96□□□□□ -1.78
VPS35-207ENST00000568191 CD38P28907 300 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 CXCR5P32302 372 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 ADRA1BP35368 520 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 MPP3Q13368 585 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 AGAP9Q5VTM2 703 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 AFMIDQ63HM1 303 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 OLFML1Q6UWY5 402 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 KRT26Q7Z3Y9 468 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 STRA8Q7Z7C7 330 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 AFAP1L2Q8N4X5 818 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 REPS2Q8NFH8 660 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 GPR150Q8NGU9 434 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 SLC35B2Q8TB61 432 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 CAGE1Q8TC20 777 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 CASKIN2Q8WXE0 1202 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 SSH1Q8WYL5 1049 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 ORAI2Q96SN7 254 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 GALNT9Q9HCQ5 603 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 C14orf119Q9NWQ9 140 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 FAM30AQ9NZY2 134 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 MCM8Q9UJA3 840 aa3.96□□□□□ -1.78
VPS35-207ENST00000568191 MTO1Q9Y2Z2 717 aaKnown RBP3.96□□□□□ -1.78
VPS35-207ENST00000568191 UNC119BA6NIH7 251 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 ADCY6O43306 1168 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 ERN1O75460 977 aaKnown RBP3.95□□□□□ -1.78
VPS35-207ENST00000568191 ESRRBO95718 433 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 GPANK1O95872 356 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 ITGAMP11215 1152 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 FDXRP22570 491 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 PROZP22891 400 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 SREBF1P36956 1147 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 MCAMP43121 646 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 ELLP55199 621 aaPredicted RBP3.95□□□□□ -1.78
VPS35-207ENST00000568191 SRSF2Q01130 221 aaKnown RBP3.95□□□□□ -1.78
VPS35-207ENST00000568191 KRTAP1-1Q07627 177 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 UBXN2BQ14CS0 331 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 OTUD7BQ6GQQ9 843 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 KCNK18Q7Z418 384 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 COLGALT2Q8IYK4 626 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 TMEM132CQ8N3T6 1108 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 NLGN4YQ8NFZ3 816 aaPredicted RBP3.95□□□□□ -1.78
VPS35-207ENST00000568191 TSPEARQ8WU66 669 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 RNF31Q96EP0 1072 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 BOD1Q96IK1 185 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 C7orf25Q9BPX7 421 aa3.95□□□□□ -1.78
VPS35-207ENST00000568191 ALOXE3Q9BYJ1 711 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms