RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LIG1P18858 919 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 GUCY2CP25092 1073 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 MCM2P49736 904 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 PEX3P56589 373 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 TDGQ13569 410 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 PDXDC1Q6P996 788 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 ALKAL1Q6UXT8 129 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 KCNK18Q7Z418 384 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 ALYREFQ86V81 257 aaKnown RBP18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 PALB2Q86YC2 1186 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 ACO2Q99798 780 aaKnown RBP18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 CLSTN3Q9BQT9 956 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 RUSC1Q9BVN2 902 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 PRKD2Q9BZL6 878 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 SMOC2Q9H3U7 446 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 EPS15L1Q9UBC2 864 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 CLUHO75153 1309 aa18.93■□□□□ 0.62
VPS9D1-203ENST00000563798 MTCL1Q9Y4B5 1905 aaKnown RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 ZMYND10O75800 440 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 FGFR3P22607 806 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 PROZP22891 400 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 CDC25AP30304 524 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 GRM5P41594 1212 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 MRE11P49959 708 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 DMP1Q13316 513 aaPredicted RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 FAM171A1Q5VUB5 890 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 ARL6IP4Q66PJ3 421 aaKnown RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 DCLRE1AQ6PJP8 1040 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 PRSS55Q6UWB4 352 aaPredicted RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 TAS1R3Q7RTX0 852 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 SPIRE2Q8WWL2 714 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 SMG7Q92540 1137 aaKnown RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 UROC1Q96N76 676 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 MRPL4Q9BYD3 311 aaKnown RBP18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 KCNK12Q9HB15 430 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 KCNG1Q9UIX4 513 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 FBXW11Q9UKB1 542 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 GDAQ9Y2T3 454 aa18.92■□□□□ 0.62
VPS9D1-203ENST00000563798 CCDC169A6NNP5 214 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 ABLIM1O14639 778 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 CD2BP2O95400 341 aaKnown RBP18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 SPATA31D3P0C874 917 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 RPL17P18621 184 aaKnown RBP18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 GJB2P29033 226 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 CD300LGQ6UXG3 332 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 SPATA31D4Q6ZUB0 917 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 SYT2Q8N9I0 419 aaPredicted RBP18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 KCNN1Q92952 543 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 NXPE3Q969Y0 559 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 PNMA5Q96PV4 448 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 IRF2BPLQ9H1B7 796 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 CDT1Q9H211 546 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 KMT5AQ9NQR1 393 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 KCND2Q9NZV8 630 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 DUSP12Q9UNI6 340 aa18.91■□□□□ 0.62
VPS9D1-203ENST00000563798 SMIM28A0A1B0GU29 152 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 SLC26A4O43511 780 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 POU2F2P09086 479 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 HNRNPA1P09651 372 aaKnown RBP eCLIP18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 MCF2P10911 925 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 HOXA9P31269 272 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 PSMD5Q16401 504 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 UPP1Q16831 310 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 MCTP1Q6DN14 999 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 HASPINQ8TF76 798 aa18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 CCDC94Q9BW85 323 aaPredicted RBP18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 TOPORSQ9NS56 1045 aaPredicted RBP18.9■□□□□ 0.62
VPS9D1-203ENST00000563798 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.9■□□□□ 0.627e-8■■■■□ 19.8
VPS9D1-203ENST00000563798 KCNE1P15382 129 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 CLCN5P51795 746 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 CLCNKBP51801 687 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 YARSP54577 528 aaKnown RBP18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 RAB33AQ14088 237 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 RTL10Q7L3V2 364 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 CEP120Q8N960 986 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 DDX27Q96GQ7 796 aaKnown RBP18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 MYADMQ96S97 322 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 TARS2Q9BW92 718 aaKnown RBP18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 BACE2Q9Y5Z0 518 aa18.89■□□□□ 0.61
VPS9D1-203ENST00000563798 H3BQV1 296 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 GALR2O43603 387 aaPredicted RBP18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 B3GAT3O94766 335 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 PLS3P13797 630 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 SLC12A3P55017 1021 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 UVSSAQ2YD98 709 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 ZNF568Q3ZCX4 644 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 TMEM119Q4V9L6 283 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 GLRA4Q5JXX5 417 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 ASTLQ6HA08 431 aaPredicted RBP18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 MPZL3Q6UWV2 235 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 CEP57Q86XR8 500 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 GLYCTKQ8IVS8 523 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 TMEM105Q8N8V8 129 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 AK8Q96MA6 479 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 PIDD1Q9HB75 910 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 SLC38A7Q9NVC3 462 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 MTRRQ9UBK8 725 aa18.88■□□□□ 0.61
VPS9D1-203ENST00000563798 ZFP37Q9Y6Q3 630 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms