RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 BSNDQ8WZ55 320 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 BORCS6Q96GS4 357 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 OSBPL6Q9BZF3 934 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 SNTG2Q9NY99 539 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 DOCK6Q96HP0 2047 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 OTOGLQ3ZCN5 2332 aa18.16■□□□□ 0.5
CLN3-208ENST00000561505 ADAM12O43184 909 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 RECQL4O94761 1208 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 NAMPTP43490 491 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 ID4P47928 161 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 PARM1Q6UWI2 310 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.15■□□□□ 0.5
CLN3-208ENST00000561505 GRASPQ7Z6J2 395 aaPredicted RBP18.15■□□□□ 0.5
CLN3-208ENST00000561505 GLYCTKQ8IVS8 523 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 C1orf210Q8IVY1 113 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 ZBTB8OSQ8IWT0 167 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 MAML2Q8IZL2 1156 aaPredicted RBP18.15■□□□□ 0.5
CLN3-208ENST00000561505 PJA1Q8NG27 643 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 PPP1R10Q96QC0 940 aaKnown RBP18.15■□□□□ 0.5
CLN3-208ENST00000561505 MTRRQ9UBK8 725 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 KCNH3Q9ULD8 1083 aa18.15■□□□□ 0.5
CLN3-208ENST00000561505 DMXL1Q9Y485 3027 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 CASTOR2A6NHX0 329 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 C8AP07357 584 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 SP9P0CG40 484 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 ATP2B1P20020 1258 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 GPC5P78333 572 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 PRPF4BQ13523 1007 aaKnown RBP18.14■□□□□ 0.49
CLN3-208ENST00000561505 XKR4Q5GH76 650 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 EEF1DP3Q658K8 133 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 RSPO2Q6UXX9 243 aaPredicted RBP18.14■□□□□ 0.49
CLN3-208ENST00000561505 FGF13Q92913 245 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 SHDQ96IW2 340 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 CCDC43Q96MW1 224 aaKnown RBP18.14■□□□□ 0.49
CLN3-208ENST00000561505 AVENQ9NQS1 362 aaPredicted RBP18.14■□□□□ 0.49
CLN3-208ENST00000561505 BACE2Q9Y5Z0 518 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 NOTCH4Q99466 2003 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 FRYLO94915 3013 aa18.14■□□□□ 0.49
CLN3-208ENST00000561505 VWA8A3KMH1 1905 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 DCNP07585 359 aaKnown RBP18.13■□□□□ 0.49
CLN3-208ENST00000561505 NTHL1P78549 312 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 PRKCQQ04759 706 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 ST3GAL1Q11201 340 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 MAPK6Q16659 721 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 ZNF528Q3MIS6 628 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 PPM1LQ5SGD2 360 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 LIN9Q5TKA1 542 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 PADI6Q6TGC4 694 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 MTSS1LQ765P7 747 aa18.13■□□□□ 0.49
CLN3-208ENST00000561505 KANSL1LA0AUZ9 987 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 STK25O00506 426 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 JAK2O60674 1132 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 XYLBO75191 536 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 PRKCBP05771 671 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 IGFBP6P24592 240 aaPredicted RBP18.12■□□□□ 0.49
CLN3-208ENST00000561505 DCAF4L1Q3SXM0 396 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 NT5DC1Q5TFE4 455 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 ALKAL1Q6UXT8 129 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 MAEAQ7L5Y9 396 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 NOSTRINQ8IVI9 506 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 ITFG1Q8TB96 612 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 NELL1Q92832 810 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 DNMT3BQ9UBC3 853 aaKnown RBP18.12■□□□□ 0.49
CLN3-208ENST00000561505 R4GN57 208 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 CACNA1IQ9P0X4 2223 aa18.12■□□□□ 0.49
CLN3-208ENST00000561505 TBC1D4O60343 1298 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 OR1D2P34982 312 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 EFNA5P52803 228 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 PPP2R5AQ15172 486 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 UPP1Q16831 310 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 AXDND1Q5T1B0 1012 aaPredicted RBP18.11■□□□□ 0.49
CLN3-208ENST00000561505 ZC3H14Q6PJT7 736 aaKnown RBP18.11■□□□□ 0.49
CLN3-208ENST00000561505 NPAS3Q8IXF0 933 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 C4orf32Q8N8J7 132 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 SUMF1Q8NBK3 374 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 HASPINQ8TF76 798 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 UROC1Q96N76 676 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 ADPGKQ9BRR6 497 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 FOXQ1Q9C009 403 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 FBXO4Q9UKT5 387 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 TNFSF13BQ9Y275 285 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 USP20Q9Y2K6 914 aa18.11■□□□□ 0.49
CLN3-208ENST00000561505 MYH15Q9Y2K3 1946 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 ARHGEF37A1IGU5 675 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 SHISA7A6NL88 538 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 ABLIM3O94929 683 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 MCM7P33993 719 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 MAGEA9P43362 315 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 MLF2Q15773 248 aaPredicted RBP18.1■□□□□ 0.49
CLN3-208ENST00000561505 SLC44A4Q53GD3 710 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 SLC8B1Q6J4K2 584 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 POTEHQ6S545 545 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 CEP57Q86XR8 500 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 SLC7A14Q8TBB6 771 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 CLDN23Q96B33 292 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 PTPRHQ9HD43 1115 aa18.1■□□□□ 0.49
CLN3-208ENST00000561505 CCL16O15467 120 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 LRRN2O75325 713 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 ECI2O75521 394 aa18.09■□□□□ 0.49
CLN3-208ENST00000561505 OR52Z1P0C646 297 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms