RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FAM26FQ5R3K3 315 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 PLA2G4FQ68DD2 849 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 CES5AQ6NT32 575 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 DHTKD1Q96HY7 919 aaPredicted RBP12.91□□□□□ -0.34
LDLR-212ENST00000560467 NECTIN4Q96NY8 510 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 TSG101Q99816 390 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 BPIFA3Q9BQP9 254 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 REEP2Q9BRK0 252 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 RUSC1Q9BVN2 902 aa12.91□□□□□ -0.34
LDLR-212ENST00000560467 WRAP73Q9P2S5 460 aaPredicted RBP12.91□□□□□ -0.34
LDLR-212ENST00000560467 A0A0U1RQF3 1178 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.9□□□□□ -0.34
LDLR-212ENST00000560467 ZBTB39O15060 712 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 HIP1RO75146 1068 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ZC3H11AO75152 810 aaKnown RBP eCLIP12.9□□□□□ -0.34
LDLR-212ENST00000560467 EPCAMP16422 314 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 NPEPPSP55786 919 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 BCAR1P56945 870 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ITIH3Q06033 890 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 DMP1Q13316 513 aaPredicted RBP12.9□□□□□ -0.34
LDLR-212ENST00000560467 UVSSAQ2YD98 709 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 DPCR1Q3MIW9 517 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ARSHQ5FYA8 562 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 MAEAQ7L5Y9 396 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ASCL5Q7RTU5 278 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 UBALD2Q8IYN6 164 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ANKRD20A12PQ8NF67 263 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 BCL7CQ8WUZ0 217 aaPredicted RBP12.9□□□□□ -0.34
LDLR-212ENST00000560467 NLRP7Q8WX94 980 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 DNAJC19Q96DA6 116 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 ZBP1Q9H171 429 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 IRF2BPLQ9H1B7 796 aa12.9□□□□□ -0.34
LDLR-212ENST00000560467 LOXHD1Q8IVV2 1947 aa12.9□□□□□ -0.35
LDLR-212ENST00000560467 MYO15AQ9UKN7 3530 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 PHLPP2Q6ZVD8 1323 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 NPHP3-ACAD11A0A0J9YXS1 232 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 TMEM150BA6NC51 233 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 CCDC169A6NNP5 214 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 ASAP2O43150 1006 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 CXCL14O95715 111 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 MAPTP10636 758 aaKnown RBP12.89□□□□□ -0.35
LDLR-212ENST00000560467 PLS3P13797 630 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 MTHFRP42898 656 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 CDC42EP1Q00587 391 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 MYL5Q02045 173 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 PAK1Q13153 545 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 TFDP1Q14186 410 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 HSP90AA2PQ14568 343 aaPredicted RBP12.89□□□□□ -0.35
LDLR-212ENST00000560467 MXD4Q14582 209 aaPredicted RBP12.89□□□□□ -0.35
LDLR-212ENST00000560467 EMC2Q15006 297 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 KLHL10Q6JEL2 608 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 VPS52Q8N1B4 723 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 TDRD5Q8NAT2 981 aaKnown RBP12.89□□□□□ -0.35
LDLR-212ENST00000560467 RNF214Q8ND24 703 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 LPPQ93052 612 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 TMEM169Q96HH4 297 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 FUCA2Q9BTY2 467 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 MRPL9Q9BYD2 267 aaKnown RBP12.89□□□□□ -0.35
LDLR-212ENST00000560467 SLC39A2Q9NP94 309 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 LIMD1Q9UGP4 676 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 EXOC7Q9UPT5 735 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 GVINP1Q7Z2Y8 2422 aa12.89□□□□□ -0.35
LDLR-212ENST00000560467 SPTBN4Q9H254 2564 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 MEIS3P2A8K0S8 358 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 IKBKBO14920 756 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 KLRC4O43908 158 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 B4GALT3O60512 393 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 MAFO75444 373 aaPredicted RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 GCNT3O95395 438 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 EOMESO95936 686 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 TPM2P07951 284 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 CDK11BP21127 795 aaKnown RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 ALDH7A1P49419 539 aaKnown RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 NUBP1P53384 320 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 CACNB1Q02641 598 aaPredicted RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 KIAA1841Q6NSI8 718 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 SYCP3Q8IZU3 236 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 GUF1Q8N442 669 aaKnown RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 GOLGA5Q8TBA6 731 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 LRRC15Q8TF66 581 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 NOC3LQ8WTT2 800 aaKnown RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 PSPC1Q8WXF1 523 aaKnown RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 SH2D3AQ9BRG2 576 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 TMEM206Q9H813 350 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 KMT5AQ9NQR1 393 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 OLFML3Q9NRN5 406 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 DZANK1Q9NVP4 752 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 TBC1D7Q9P0N9 293 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 MAGEC2Q9UBF1 373 aaPredicted RBP12.88□□□□□ -0.35
LDLR-212ENST00000560467 RWDD2AQ9UIY3 292 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 INPP5FQ9Y2H2 1132 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 FAM186AA6NE01 2351 aa12.88□□□□□ -0.35
LDLR-212ENST00000560467 FRMD3A2A2Y4 597 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 PRR23AA6NEV1 266 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 PROB1E7EW31 1015 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 CALUO43852 315 aaPredicted RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 STBD1O95210 358 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 RPL13P26373 211 aaKnown RBP12.87□□□□□ -0.35
LDLR-212ENST00000560467 PHKA2P46019 1235 aa12.87□□□□□ -0.35
LDLR-212ENST00000560467 ZNF131P52739 623 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms