RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	DSG1	Q02413	1049 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	FAM47A	Q5JRC9	791 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	THNSL2	Q86YJ6	484 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	LILRB2	Q8N423	598 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	ZNF610	Q8N9Z0	462 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	OR14C36	Q8NHC7	312 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	CHTF18	Q8WVB6	975 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	ZSWIM1	Q9BR11	485 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	KCTD5	Q9NXV2	234 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	KCNE5	Q9UJ90	142 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	DMTF1	Q9Y222	760 aa		4.2	□□□□□ -1.74
SPG11-222	ENST00000560435	KCNAB3	O43448	404 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	CTSS	P25774	331 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	MANF	P55145	182 aa	Known RBP	4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	AKNAD1	Q5T1N1	836 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	MED25	Q71SY5	747 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	DRC7	Q8IY82	874 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	PAWR	Q96IZ0	340 aa	Known RBP	4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	TIMP4	Q99727	224 aa		4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	THG1L	Q9NWX6	298 aa	Known RBP	4.19	□□□□□ -1.74
SPG11-222	ENST00000560435	RFPL3	O75679	317 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	CELA2A	P08217	269 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	FGFR4	P22455	802 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	LSP1	P33241	339 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	TRIM25	Q14258	630 aa	Known RBP	4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	NXPE1	Q8N323	547 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	LNX2	Q8N448	690 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	NACC2	Q96BF6	587 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	SARAF	Q96BY9	339 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	IL17RB	Q9NRM6	502 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	CDY2A	Q9Y6F7	541 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	PNPLA7	Q6ZV29	1317 aa		4.18	□□□□□ -1.74
SPG11-222	ENST00000560435	LCHN	A4D1U4	455 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	ZNF891	A8MT65	544 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	ADCY6	O43306	1168 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	WT1	P19544	449 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	GCSH	P23434	173 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	KPNA1	P52294	538 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	VAV2	P52735	878 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	EZH2	Q15910	746 aa	Known RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	CYP2A13	Q16696	494 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	PDPR	Q8NCN5	879 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	HASPIN	Q8TF76	798 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	DPF1	Q92782	380 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	PTCD3	Q96EY7	689 aa	Known RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	UNKL	Q9H9P5	680 aa	Known RBP	4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	ENTPD2	Q9Y5L3	495 aa		4.17	□□□□□ -1.74
SPG11-222	ENST00000560435	PHF2	O75151	1096 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	GPANK1	O95872	356 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	POU3F3	P20264	500 aa	Predicted RBP	4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	GPD1	P21695	349 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	RAP2B	P61225	183 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	HSD11B2	P80365	405 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	MST1L	Q2TV78	715 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	RRP12	Q5JTH9	1297 aa	Known RBP	4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	FRMD7	Q6ZUT3	714 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	TRMT2A	Q8IZ69	625 aa	Known RBP	4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	MS4A5	Q9H3V2	200 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	PRDM12	Q9H4Q4	367 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	RPTOR	Q8N122	1335 aa		4.16	□□□□□ -1.74
SPG11-222	ENST00000560435	ATRNL1	Q5VV63	1379 aa		4.15	□□□□□ -1.74
SPG11-222	ENST00000560435	CCDC78	A2IDD5	438 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	ORC4	O43929	436 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	PEX1	O43933	1283 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	KPNA6	O60684	536 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	ALOX15	P16050	662 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	POU3F2	P20265	443 aa	Predicted RBP	4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	CANX	P27824	592 aa	Known RBP	4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	PTPN7	P35236	360 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	PABPC4	Q13310	644 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	SP140	Q13342	867 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	SQSTM1	Q13501	440 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	TERF2	Q15554	542 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	GPR162	Q16538	588 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	SOGA3	Q5TF21	947 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	FOXR2	Q6PJQ5	311 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	COLGALT2	Q8IYK4	626 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	REPS2	Q8NFH8	660 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	DDB2	Q92466	427 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	WASF1	Q92558	559 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	KRTAP2-2	Q9BYT5	123 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	ANO3	Q9BYT9	981 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	FAM30A	Q9NZY2	134 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	KCNG1	Q9UIX4	513 aa		4.15	□□□□□ -1.75
SPG11-222	ENST00000560435	CCDC151	A5D8V7	595 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	MANSC4	A6NHS7	340 aa	Predicted RBP	4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	PPP1R12A	O14974	1030 aa	Predicted RBP	4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	KDM1A	O60341	852 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	ERN1	O75460	977 aa	Known RBP	4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	PRKCG	P05129	697 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	ITPKB	P27987	946 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	FOLR3	P41439	243 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	OCRL	Q01968	901 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	PITRM1	Q5JRX3	1037 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	KIAA0895L	Q68EN5	471 aa		4.14	□□□□□ -1.75
SPG11-222	ENST00000560435	SMC1B	Q8NDV3	1235 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms