RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 IER5LQ5T953 404 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 ASTLQ6HA08 431 aaPredicted RBP13.8□□□□□ -0.2
SNX1-209ENST00000559961 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
SNX1-209ENST00000559961 RNF168Q8IYW5 571 aaPredicted RBP13.8□□□□□ -0.2
SNX1-209ENST00000559961 FLCNQ8NFG4 579 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 CALML4Q96GE6 196 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 ACAP3Q96P50 834 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 KIFC3Q9BVG8 833 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 KCNK12Q9HB15 430 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 POLD4Q9HCU8 107 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 KCND2Q9NZV8 630 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 POLIQ9UNA4 740 aa13.8□□□□□ -0.2
SNX1-209ENST00000559961 ZFP37Q9Y6Q3 630 aaPredicted RBP13.8□□□□□ -0.2
SNX1-209ENST00000559961 F8W810 466 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 ZMYND10O75800 440 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 KIF4AO95239 1232 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 BMP15O95972 392 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 HNRNPA1P09651 372 aaKnown RBP eCLIP13.79□□□□□ -0.2
SNX1-209ENST00000559961 RPL17P18621 184 aaKnown RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 GJB2P29033 226 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 UBA7P41226 1012 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 TOB1P50616 345 aaPredicted RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 CLCN5P51795 746 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 OSTNP61366 133 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 ECM1Q16610 540 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 UVSSAQ2YD98 709 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 NT5DC1Q5TFE4 455 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 LARP1BQ659C4 914 aaKnown RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 ARL6IP4Q66PJ3 421 aaKnown RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 PRSS55Q6UWB4 352 aaPredicted RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 ANKS3Q6ZW76 656 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 PIK3R5Q8WYR1 880 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 BICD1Q96G01 975 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 TMX3Q96JJ7 454 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 LARSQ9P2J5 1176 aaKnown RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 NUB1Q9Y5A7 615 aa13.79□□□□□ -0.2
SNX1-209ENST00000559961 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.79□□□□□ -0.2
SNX1-209ENST00000559961 VWA3AA6NCI4 1184 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 PTGESO14684 152 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 SLC26A4O43511 780 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 EFEMP2O95967 443 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 KRT18P05783 430 aaKnown RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 MCF2P10911 925 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 HARSP12081 509 aaKnown RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 SCP2P22307 547 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 FSHRP23945 695 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 MARCKSP29966 332 aaPredicted RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 GRM5P41594 1212 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 VCPP55072 806 aaKnown RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 RTP2Q5QGT7 225 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 EEF1DP3Q658K8 133 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 RINT1Q6NUQ1 792 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 MPZL3Q6UWV2 235 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 RTL10Q7L3V2 364 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 GET4Q7L5D6 327 aaPredicted RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 PRSS33Q8NF86 280 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 AK8Q96MA6 479 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 KIF2CQ99661 725 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 ACO2Q99798 780 aaKnown RBP13.78□□□□□ -0.2
SNX1-209ENST00000559961 RTP3Q9BQQ7 232 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 PAAF1Q9BRP4 392 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 EPS15L1Q9UBC2 864 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 DUSP12Q9UNI6 340 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 USP20Q9Y2K6 914 aa13.78□□□□□ -0.2
SNX1-209ENST00000559961 SMIM28A0A1B0GU29 152 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 TTLL13PA6NNM8 815 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 PP2D1A8MPX8 630 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 H7C4K7 107 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 SLC16A4O15374 487 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 CLDN3O15551 220 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 GALR2O43603 387 aaPredicted RBP13.77□□□□□ -0.21
SNX1-209ENST00000559961 C8AP07357 584 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 PLS3P13797 630 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 GUCY2CP25092 1073 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 CDC25AP30304 524 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 RPL9P32969 192 aaKnown RBP13.77□□□□□ -0.21
SNX1-209ENST00000559961 ABCD1P33897 745 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 OR1D2P34982 312 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 ATP2C1P98194 919 aaPredicted RBP13.77□□□□□ -0.21
SNX1-209ENST00000559961 RAD51AP2Q09MP3 1159 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 KYAT1Q16773 422 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 GLRA4Q5JXX5 417 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 LILRA6Q6PI73 481 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 C1orf186Q6ZWK4 172 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 SIX5Q8N196 739 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 LNX1Q8TBB1 728 aaPredicted RBP13.77□□□□□ -0.21
SNX1-209ENST00000559961 SPIRE2Q8WWL2 714 aa13.77□□□□□ -0.21
SNX1-209ENST00000559961 TARS2Q9BW92 718 aaKnown RBP13.77□□□□□ -0.21
SNX1-209ENST00000559961 SFI1A8K8P3 1242 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 TMEM189-UBE2V1I3L0A0 370 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 XPOTO43592 962 aaKnown RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 TOM1L1O75674 476 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 PDGFBP01127 241 aaPredicted RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 PLA2G4BP0C869 781 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 PDCP20941 246 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 CLCNKBP51801 687 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 RAB33AQ14088 237 aa13.76□□□□□ -0.21
SNX1-209ENST00000559961 AXDND1Q5T1B0 1012 aaPredicted RBP13.76□□□□□ -0.21
SNX1-209ENST00000559961 MTSS1LQ765P7 747 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms