RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KCNJ1P48048 391 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 GPC3P51654 580 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 SLC18A1P54219 525 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 GTF2BQ00403 316 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 MYO1EQ12965 1108 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 TNIP1Q15025 636 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 MTFR1Q15390 333 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 KCTD19Q17RG1 926 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-231ENST00000557433 LARGE2Q8N3Y3 721 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 AGAP11Q8TF27 550 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 DDX23Q9BUQ8 820 aaKnown RBP17.38■□□□□ 0.37
SHMT2-231ENST00000557433 KCNK9Q9NPC2 374 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 TXLNGQ9NUQ3 528 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 EXOC7Q9UPT5 735 aa17.38■□□□□ 0.37
SHMT2-231ENST00000557433 THSD7AQ9UPZ6 1657 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 LIN7AO14910 233 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 CLDN3O15551 220 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 CYP26A1O43174 497 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 LYPLA2O95372 231 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 CFBP00751 764 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 P4HBP07237 508 aaKnown RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 MSH2P43246 934 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 KCNJ2P63252 427 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 IL9RQ01113 521 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 UBAP2Q5T6F2 1119 aaKnown RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 KRT39Q6A163 491 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 SH3BP5LQ7L8J4 393 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 NIPA1Q7RTP0 329 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 CCDC89Q8N998 374 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 BANK1Q8NDB2 785 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 KREMEN1Q96MU8 473 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 TGS1Q96RS0 853 aaKnown RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 TMX4Q9H1E5 349 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 DEFB129Q9H1M3 183 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 WRAP73Q9P2S5 460 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 ANAPC5Q9UJX4 755 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 MYH11P35749 1972 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 PLA2G6O60733 806 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 ENTPD3O75355 529 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 DLATP10515 647 aaKnown RBP17.37■□□□□ 0.37
SHMT2-231ENST00000557433 ITGA8P53708 1063 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 LRRC14Q15048 493 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 PPM1KQ8N3J5 372 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 CNKSR1Q969H4 720 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 NT5C1BQ96P26 610 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 DCLK3Q9C098 648 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 PPCSQ9HAB8 311 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 ARHGEF10LQ9HCE6 1279 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 TMEM8AQ9HCN3 771 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 ADAMTSL1Q8N6G6 1762 aa17.37■□□□□ 0.37
SHMT2-231ENST00000557433 FAM196BA6NMK8 535 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 IPO5O00410 1097 aaKnown RBP17.36■□□□□ 0.37
SHMT2-231ENST00000557433 NDC80O14777 642 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 MAGEB2O15479 319 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 LUC7L3O95232 432 aaKnown RBP17.36■□□□□ 0.37
SHMT2-231ENST00000557433 CHRM1P11229 460 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-231ENST00000557433 MAPK4P31152 587 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 PSEN1P49768 467 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 TCP10Q12799 353 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 PARP6Q2NL67 630 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 ACCSLQ4AC99 568 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 SPDYAQ5MJ70 313 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 SLC47A2Q86VL8 602 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 ZNF677Q86XU0 584 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 MGARPQ8TDB4 240 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 TMC2Q8TDI7 906 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 CHURC1Q8WUH1 139 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 CBWD1Q9BRT8 395 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 RANBP17Q9H2T7 1088 aaKnown RBP17.36■□□□□ 0.37
SHMT2-231ENST00000557433 PCIF1Q9H4Z3 704 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 NINJ2Q9NZG7 142 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 UBR3Q6ZT12 1888 aa17.36■□□□□ 0.37
SHMT2-231ENST00000557433 E7ENQ6 273 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 POLRMTO00411 1230 aaKnown RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 ZC3H11AO75152 810 aaKnown RBP eCLIP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 UNC5CO95185 931 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 NAA25Q14CX7 972 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 CLEC16AQ2KHT3 1053 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 SHROOM1Q2M3G4 852 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 STRIP1Q5VSL9 837 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 CHADLQ6NUI6 762 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 RGS9BPQ6ZS82 235 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 OTUD6AQ7L8S5 288 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 MIER3Q7Z3K6 550 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 C1orf54Q8WWF1 131 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 MXRA8Q9BRK3 442 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 SERPINA10Q9UK55 444 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 STARD13Q9Y3M8 1113 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 ATMINO43313 823 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-231ENST00000557433 GDF11O95390 407 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 ALDH1B1P30837 517 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 CHKAP35790 457 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 ADCY8P40145 1251 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 SETDB1Q15047 1291 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 CCNG2Q16589 344 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 DOK7Q18PE1 504 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 HAUS6Q7Z4H7 955 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 FITM2Q8N6M3 262 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 ANKRD42Q8N9B4 389 aa17.35■□□□□ 0.37
SHMT2-231ENST00000557433 HELQQ8TDG4 1101 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms