RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 PDIA4P13667 645 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 IDEP14735 1019 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 TNFSF9P41273 254 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 CASP5P51878 434 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 SPAG1Q07617 926 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 MCL1Q07820 350 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 TUSC3Q13454 348 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNC3Q14003 757 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 NOLC1Q14978 699 aaKnown RBP eCLIP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 PTPN14Q15678 1187 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 SLC10A6Q3KNW5 377 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 PDE12Q6L8Q7 609 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 ZPBP2Q6X784 338 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 GLIS3Q8NEA6 775 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNG4Q8TDN1 519 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 LEO1Q8WVC0 666 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 PPP2R3CQ969Q6 453 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 C18orf25Q96B23 403 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 SNX27Q96L92 541 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 UHRF1Q96T88 793 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 CCDC94Q9BW85 323 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 C5orf42Q9H799 3197 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 HNRNPDLO14979 420 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 POLR2DO15514 142 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 NCK2O43639 380 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 LILRB3O75022 631 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 MYBP10242 640 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 EPCAMP16422 314 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 MATR3P43243 847 aaKnown RBP eCLIP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 LIG4P49917 911 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 GTF2BQ00403 316 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 HSP90AA2PQ14568 343 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 XKR4Q5GH76 650 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 RESP18Q5W5W9 173 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 ATL3Q6DD88 541 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 CD300LGQ6UXG3 332 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 ZNF720Q7Z2F6 126 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 GRAMD1CQ8IYS0 662 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 RNF168Q8IYW5 571 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 C12orf76Q8N812 135 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 COLEC11Q9BWP8 271 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 STRA6Q9BX79 667 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 GDPD2Q9HCC8 539 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 CD207Q9UJ71 328 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 ADAM28Q9UKQ2 775 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 CFAP45Q9UL16 551 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 ZMYM2Q9UBW7 1377 aa12.67□□□□□ -0.38
CCDC88C-208ENST00000554165 TCHHQ07283 1943 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 A0A0B4J269 797 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 H0YCG3 227 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 CLDN3O15551 220 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 MBTPS2O43462 519 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 FAM189A1O60320 539 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 TADA2AO75478 443 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 PPP1R37O75864 691 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 PIGRP01833 764 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 SOD2P04179 222 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 CNPP09543 421 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 CXCL8P10145 99 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 RPL17P18621 184 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 BECN1Q14457 450 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 HERC4Q5GLZ8 1057 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KIAA0319Q5VV43 1072 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 FUT10Q6P4F1 479 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 SYCE2Q6PIF2 218 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 APBB1IPQ7Z5R6 666 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 MAP4K3Q8IVH8 894 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 C3orf58Q8NDZ4 430 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 ZSWIM2Q8NEG5 633 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 SLC22A17Q8WUG5 538 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KHSRPQ92945 711 aaKnown RBP eCLIP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNN1Q92952 543 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 SPATA32Q96LK8 384 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 ACAP3Q96P50 834 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KLHL5Q96PQ7 755 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 CDCA3Q99618 268 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 HERC2P3Q9BVR0 1158 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 BLZF1Q9H2G9 400 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 MRPL44Q9H9J2 332 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 PANK4Q9NVE7 773 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KBTBD4Q9NVX7 518 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNG1Q9UIX4 513 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 HCFC2Q9Y5Z7 792 aa12.66□□□□□ -0.38
CCDC88C-208ENST00000554165 A0A1B0GVL5 298 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 FRMD3A2A2Y4 597 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 I3L4J1 428 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 NR1I2O75469 434 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 WEE2P0C1S8 567 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 ADSSP30520 456 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 AFMP43652 599 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 GLUD2P49448 558 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 CLCNKBP51801 687 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 GUCY2FP51841 1108 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 YARSP54577 528 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 COASYQ13057 564 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 ENOX2Q16206 610 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 ANKRD54Q6NXT1 300 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 PRSS55Q6UWB4 352 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 GLYCTKQ8IVS8 523 aa12.65□□□□□ -0.38
CCDC88C-208ENST00000554165 IQUBQ8NA54 791 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms