RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 KAT5Q92993 513 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 IFT74Q96LB3 600 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 SELENOSQ9BQE4 189 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.11□□□□□ -0.313e-6■■■■■ 44
SHMT2-207ENST00000553837 INTUQ9ULD6 942 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 PPP1R9AQ9ULJ8 1098 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 FZD1Q9UP38 647 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 CCDC169A6NNP5 214 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 SLC16A4O15374 487 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 LYPLA2O95372 231 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 VIMP08670 466 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 ALDH5A1P51649 535 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 KCNJ2P63252 427 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 SAMD7Q7Z3H4 446 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 PEX26Q7Z412 305 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 HAUS6Q7Z4H7 955 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 CROCCP2Q86T23 111 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 DAAM2Q86T65 1068 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 MCF2L2Q86YR7 1114 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 LPAR1Q92633 364 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 HES6Q96HZ4 224 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 KIFC3Q9BVG8 833 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 DDX47Q9H0S4 455 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 VPS33BQ9H267 617 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 ECT2Q9H8V3 914 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 INTS9Q9NV88 658 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 HSPBP1Q9NZL4 362 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 LARSQ9P2J5 1176 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 COG5Q9UP83 839 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 AGAP1Q9UPQ3 857 aa13.11□□□□□ -0.31
SHMT2-207ENST00000553837 NOC2LQ9Y3T9 749 aaKnown RBP13.11□□□□□ -0.31
SHMT2-207ENST00000553837 NCANO14594 1321 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 GOLGA8IPA6NC78 632 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 GOLGA8JA6NMD2 632 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ADRB2P07550 413 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RARAP10276 462 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ATP2A2P16615 1042 aaKnown RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 LMNB1P20700 586 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 VAMP7P51809 220 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 PEX3P56589 373 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 SOX10P56693 466 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 NCALDP61601 193 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 PPATQ06203 517 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 KIF22Q14807 665 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 EPC2Q52LR7 807 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 DCAF12L1Q5VU92 463 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 PDCD2LQ9BRP1 358 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 YIPF3Q9GZM5 350 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RAB17Q9H0T7 212 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 THAP2Q9H0W7 228 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RPAP3Q9H6T3 665 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 UBE2TQ9NPD8 197 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ZFATQ9P243 1243 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 SUCLA2Q9P2R7 463 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 AMACRQ9UHK6 382 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ATP8A1Q9Y2Q0 1164 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 NR2E1Q9Y466 385 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ANKRD63C9JTQ0 380 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 NUDT17P0C025 328 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 TMEM253P0C7T8 217 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 MAPTP10636 758 aaKnown RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ADSSP30520 456 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ZNF280AP59817 542 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 LACTBP83111 547 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ATP11AP98196 1134 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 GTF2BQ00403 316 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 MYBPC2Q14324 1141 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 NBPF12Q5TAG4 269 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RBM12BQ8IXT5 1001 aaKnown RBP13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RASGEF1CQ8N431 466 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ELMO3Q96BJ8 720 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ATG4CQ96DT6 458 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ACCSQ96QU6 501 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 RMDN3Q96TC7 470 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 FMO2Q99518 471 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 TXLNGYQ9BZA5 131 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 ACP6Q9NPH0 428 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 PXMP2Q9NR77 195 aa13.1□□□□□ -0.31
SHMT2-207ENST00000553837 NFKBIEO00221 500 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 IGF2BP3O00425 579 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-207ENST00000553837 DDX3YO15523 660 aaKnown RBP13.09□□□□□ -0.31
SHMT2-207ENST00000553837 UBOX5O94941 541 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 LINGO3P0C6S8 592 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 PDE6CP51160 858 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 COPS2P61201 443 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 TNIP1Q15025 636 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 GALNTL6Q49A17 601 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 ANKRD20A2Q5SQ80 823 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 ANKRD20A1Q5TYW2 823 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 ANKRD20A3Q5VUR7 823 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 SLC30A9Q6PML9 568 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 NSMFQ6X4W1 530 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 INTS8Q75QN2 995 aaKnown RBP13.09□□□□□ -0.31
SHMT2-207ENST00000553837 ANO5Q75V66 913 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 APLFQ8IW19 511 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-207ENST00000553837 C12orf56Q8IXR9 622 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 TMEM174Q8WUU8 243 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 KLHL29Q96CT2 875 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 PRMT1Q99873 361 aaKnown RBP13.09□□□□□ -0.31
SHMT2-207ENST00000553837 TMEM206Q9H813 350 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms