RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DR1Q01658 176 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TRPC3Q13507 836 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 DCAF12L1Q5VU92 463 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 FKBP1CQ5VVH2 108 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 GSTA5Q7RTV2 222 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM192Q8IY95 271 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC26Q8TAB7 109 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 THOC1Q96FV9 657 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 SPATA33Q96N06 139 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 CAPS2Q9BXY5 557 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 TSPYL1Q9H0U9 437 aa6□□□□□ -1.45
LIMA1-215ENST00000552823 MRPL42Q9Y6G3 142 aaKnown RBP6□□□□□ -1.45
LIMA1-215ENST00000552823 GOLGA6L10A0A0M3HER8 536 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SOWAHBA6NEL2 793 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 GOLGA8MH3BSY2 632 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 NDUFAB1O14561 156 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 VTNP04004 478 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SUPT20HL2P0C7V6 817 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 MYL6P60660 151 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 GTF2BQ00403 316 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 FMO1Q01740 532 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 CYP24A1Q07973 514 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 KCTD2Q14681 263 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SMTNL2Q2TAL5 461 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 XKR3Q5GH77 459 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PRAMEF19Q5SWL8 479 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 C9orf131Q5VYM1 1079 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 DCUN1D2Q6PH85 259 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 LRRC31Q6UY01 552 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TAS1R3Q7RTX0 852 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 LRRC57Q8N9N7 239 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 LMO3Q8TAP4 145 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 FBXO25Q8TCJ0 367 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SLC16A10Q8TF71 515 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ZBED3Q96IU2 234 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 CPB2Q96IY4 423 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PAIP2Q9BPZ3 127 aaKnown RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ASCC2Q9H1I8 757 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PORCNQ9H237 461 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SYNCQ9H7C4 482 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SAE1Q9UBE0 346 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PCSK1NQ9UHG2 260 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 GGT7Q9UJ14 662 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TSKSQ9UJT2 592 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 DBR1Q9UK59 544 aaKnown RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 AKT3Q9Y243 479 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PRRC2BQ5JSZ5 2229 aaKnown RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 E7EVH7 732 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 MYO1FO00160 1098 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 OPA1O60313 960 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PPP1R37O75864 691 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 DGAT1O75907 488 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF286BP0CG31 522 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TXNP10599 105 aaKnown RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TCF4P15884 667 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SFNP31947 248 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 HSD17B3P37058 310 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 NSFP46459 744 aaKnown RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 LIG3P49916 1009 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ZNF280AP59817 542 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PPP2R5AQ15172 486 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 GPR162Q16538 588 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 KCNT1Q5JUK3 1230 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 EEF1DP3Q658K8 133 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 CYP4F22Q6NT55 531 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PAXIP1Q6ZW49 1069 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SYCE1Q8N0S2 351 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 UBL4BQ8N7F7 174 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ANKRD42Q8N9B4 389 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 EXOC4Q96A65 974 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 PBKQ96KB5 322 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 MKNK1Q9BUB5 465 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 HAPLN2Q9GZV7 340 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 SPATC1LQ9H0A9 340 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TAF1DQ9H5J8 278 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ZWILCHQ9H900 591 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 ADAM22Q9P0K1 906 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 CALCOCO1Q9P1Z2 691 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 TJP2Q9UDY2 1190 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 POLIQ9UNA4 740 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 NUB1Q9Y5A7 615 aa5.99□□□□□ -1.45
LIMA1-215ENST00000552823 POLR2AP24928 1970 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TARSL2A2RTX5 802 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 OATP04181 439 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 SHBGP04278 402 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TMEM253P0C7T8 217 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 GNA15P30679 374 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 PRKCIP41743 596 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 LRRC14Q15048 493 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 AMHR2Q16671 573 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 CDO1Q16878 200 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 GLRA4Q5JXX5 417 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 TDRD10Q5VZ19 366 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 CCDC137Q6PK04 289 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 B3GNT9Q6UX72 402 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 APOBEC3FQ8IUX4 373 aaKnown RBP5.98□□□□□ -1.45
LIMA1-215ENST00000552823 ZDHHC14Q8IZN3 488 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 EMC1Q8N766 993 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 NETO2Q8NC67 525 aa5.98□□□□□ -1.45
LIMA1-215ENST00000552823 KIFAP3Q92845 792 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms