RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM228AQ86W67 206 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 FMNL3Q8IVF7 1028 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 FUKQ8N0W3 1084 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 C3orf20Q8ND61 904 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 TMEM161BQ8NDZ6 487 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ELAC2Q9BQ52 826 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 INTS9Q9NV88 658 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 FEM1BQ9UK73 627 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 TBX20Q9UMR3 447 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CD2APQ9Y5K6 639 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 UBIAD1Q9Y5Z9 338 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ADGRA3Q8IWK6 1321 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CFHP08603 1231 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 VIMP08670 466 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 RARGP13631 454 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 HSPA6P17066 643 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 HSPA1LP34931 641 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 NPTX2P47972 431 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 PDE6CP51160 858 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 MFAP3P55082 362 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 WNT7BP56706 349 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 RWDD2BP57060 319 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 RPS6P62753 249 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ADCY1Q08828 1119 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 SWT1Q5T5J6 900 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 KRT39Q6A163 491 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 STYK1Q6J9G0 422 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CYB5D1Q6P9G0 228 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 SEPT14Q6ZU15 432 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ANO5Q75V66 913 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 FAM160B2Q86V87 743 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 SYTL5Q8TDW5 730 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 IPO4Q8TEX9 1081 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CPA5Q8WXQ8 436 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ZKSCAN4Q969J2 545 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CENPTQ96BT3 561 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ANAPC7Q9UJX3 599 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 GTF3C4Q9UKN8 822 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 SYNPO2Q9UMS6 1093 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 R3HDM2Q9Y2K5 976 aaKnown RBP8.03□□□□□ -1.12
LIMA1-213ENST00000552720 PARP14Q460N5 1801 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 TESPA1A2RU30 521 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ECEL1O95672 775 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 MAPTP10636 758 aaKnown RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 RRM1P23921 792 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SP4Q02446 784 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ADCY2Q08462 1091 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 TNIP1Q15025 636 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PGM5Q15124 567 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 CNGA2Q16280 664 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SGO2Q562F6 1265 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 C6orf118Q5T5N4 469 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 RSBN1LQ6PCB5 846 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SV2AQ7L0J3 742 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC197Q8NCU1 140 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 POMGNT1Q8WZA1 660 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 WNK4Q96J92 1243 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 NT5C1BQ96P26 610 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 HEMGNQ9BXL5 484 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ACTR5Q9H9F9 607 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 WDR70Q9NW82 654 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 RAB20Q9NX57 234 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ASIC3Q9UHC3 531 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 CNOT7Q9UIV1 285 aaKnown RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 MTUS1Q9ULD2 1270 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 MROH7Q68CQ1 1323 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PASKQ96RG2 1323 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 CCT8L1PA6NM43 557 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 GJB6O95452 261 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 GGPS1O95749 300 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 AGTP01019 485 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 GH1P01241 217 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 MAPK4P31152 587 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 DRP2Q13474 957 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ALCAMQ13740 583 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PLCB4Q15147 1175 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 KYNUQ16719 465 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF568Q3ZCX4 644 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SPDYE2Q495Y8 402 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 LACTB2Q53H82 288 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 FAM133BQ5BKY9 247 aaKnown RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 TNFAIP8L3Q5GJ75 292 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PCNX4Q63HM2 1172 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SCARA3Q6AZY7 606 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 SPOPLQ6IQ16 392 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ACAD10Q6JQN1 1059 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ANKS1BQ7Z6G8 1248 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PIGWQ7Z7B1 504 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 CYP4X1Q8N118 509 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 FBXL13Q8NEE6 735 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF516Q92618 1163 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 LRRC19Q9H756 370 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM8AQ9HCN3 771 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF277Q9NRM2 450 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 ABCF3Q9NUQ8 709 aa8.02□□□□□ -1.13
LIMA1-213ENST00000552720 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 TPX2Q9ULW0 747 aaKnown RBP8.02□□□□□ -1.13
LIMA1-213ENST00000552720 PLA2G6O60733 806 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 CETPP11597 493 aa8.01□□□□□ -1.13
LIMA1-213ENST00000552720 SCP2P22307 547 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms