RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 LYPLA2O95372 231 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 NPTXRO95502 500 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 TDGF1P13385 188 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 GCFC2P16383 781 aaKnown RBP14.24□□□□□ -0.13
USP28-212ENST00000544750 GLRA2P23416 452 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 ARHGAP8P85298 464 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 PFKPQ01813 784 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 NCBP1Q09161 790 aaKnown RBP14.24□□□□□ -0.13
USP28-212ENST00000544750 TFDP1Q14186 410 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 ZBTB41Q5SVQ8 909 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 LIN9Q5TKA1 542 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 FAM171A1Q5VUB5 890 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 NEK8Q86SG6 692 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 ZNF687Q8N1G0 1237 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 ATRIPQ8WXE1 791 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 KXD1Q9BQD3 176 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 PHF20Q9BVI0 1012 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 TRIM6Q9C030 488 aaPredicted RBP14.24□□□□□ -0.13
USP28-212ENST00000544750 CXCL16Q9H2A7 254 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 PARD6AQ9NPB6 346 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 HCFC1R1Q9NWW0 138 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 DNMT3BQ9UBC3 853 aaKnown RBP14.24□□□□□ -0.13
USP28-212ENST00000544750 KCNH3Q9ULD8 1083 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 KCNJ14Q9UNX9 436 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 USP24Q9UPU5 2620 aa14.24□□□□□ -0.13
USP28-212ENST00000544750 CYP4A11Q02928 519 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 RAB33AQ14088 237 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 UVSSAQ2YD98 709 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 TSSK4Q6SA08 328 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 PPP4R3CPQ6ZMV5 832 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 POTEDQ86YR6 584 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 SLC7A14Q8TBB6 771 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 HASPINQ8TF76 798 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 NELL2Q99435 816 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 HSD17B14Q9BPX1 270 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 RTKNQ9BST9 563 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 PLA2G2FQ9BZM2 168 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 PARP2Q9UGN5 583 aa14.23□□□□□ -0.13
USP28-212ENST00000544750 CFAP47Q6ZTR5 3102 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 CASTOR2A6NHX0 329 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 TBC1D4O60343 1298 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 XYLBO75191 536 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 ECI2O75521 394 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 DGAT1O75907 488 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 LMNB2Q03252 620 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 AXDND1Q5T1B0 1012 aaPredicted RBP14.22□□□□□ -0.13
USP28-212ENST00000544750 NCAPH2Q6IBW4 605 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 MAMSTRQ6ZN01 415 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 TPRG1Q6ZUI0 275 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 RTL10Q7L3V2 364 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 ZNF274Q96GC6 653 aaPredicted RBP14.22□□□□□ -0.13
USP28-212ENST00000544750 ANKEF1Q9NU02 776 aa14.22□□□□□ -0.13
USP28-212ENST00000544750 CNOT1A5YKK6 2376 aaKnown RBP14.22□□□□□ -0.13
USP28-212ENST00000544750 CCDC194A0A1B0GVG4 234 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 DCDC2BA2VCK2 349 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 TTLL13PA6NNM8 815 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 CCNT1O60563 726 aaKnown RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 ADRB1P08588 477 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 IGFBP6P24592 240 aaPredicted RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 PSMA5P28066 241 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 RARRES1P49788 294 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 MTAPQ13126 283 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 FAM187BQ17R55 369 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 SLC5A9Q2M3M2 681 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 PABPC1LQ4VXU2 614 aaKnown RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 EARS2Q5JPH6 523 aaKnown RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 CD300LGQ6UXG3 332 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 RUFY3Q7L099 469 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 CEP57Q86XR8 500 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 TPH2Q8IWU9 490 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 OXER1Q8TDS5 423 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 PRIMPOLQ96LW4 560 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 EIF2AK1Q9BQI3 630 aaKnown RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 FAM126AQ9BYI3 521 aaPredicted RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 FZD8Q9H461 694 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 AVENQ9NQS1 362 aaPredicted RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 HEBP1Q9NRV9 189 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 GDE1Q9NZC3 331 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 MTRRQ9UBK8 725 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 CDV3Q9UKY7 258 aaKnown RBP14.21□□□□□ -0.13
USP28-212ENST00000544750 POLIQ9UNA4 740 aa14.21□□□□□ -0.13
USP28-212ENST00000544750 GREB1Q4ZG55 1949 aa14.21□□□□□ -0.14
USP28-212ENST00000544750 CITO14578 2027 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 TMEM189-UBE2V1I3L0A0 370 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 NCAM2O15394 837 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 REC8O95072 547 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 THP07101 528 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 FGFR3P22607 806 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 FCARP24071 287 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 OR1D2P34982 312 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 ADCY1Q08828 1119 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 ELAVL2Q12926 359 aaKnown RBP14.2□□□□□ -0.14
USP28-212ENST00000544750 CDCA2Q69YH5 1023 aaPredicted RBP14.2□□□□□ -0.14
USP28-212ENST00000544750 PDXDC1Q6P996 788 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.2□□□□□ -0.14
USP28-212ENST00000544750 ZNF852Q6ZMS4 543 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 SLFN12Q8IYM2 578 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 ING5Q8WYH8 240 aa14.2□□□□□ -0.14
USP28-212ENST00000544750 SECISBP2LQ93073 1101 aaKnown RBP14.2□□□□□ -0.14
USP28-212ENST00000544750 ZSWIM6Q9HCJ5 1215 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms