RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TMEM87AQ8NBN3 555 aa24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 TMEM169Q96HH4 297 aa24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 IPO9Q96P70 1041 aaKnown RBP24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 PPP1R10Q96QC0 940 aaKnown RBP24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 MSTO1Q9BUK6 570 aa24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 NSUN3Q9H649 340 aaKnown RBP24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 TLR9Q9NR96 1032 aa24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 PRG3Q9Y2Y8 225 aaPredicted RBP24.81■■□□□ 1.56
SFSWAP-204ENST00000535399 SMIM28A0A1B0GU29 152 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 EIF3DO15371 548 aaKnown RBP eCLIP24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 HOXD13P35453 343 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 TNFSF9P41273 254 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 TUSC3Q13454 348 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 KYAT1Q16773 422 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 STXBP4Q6ZWJ1 553 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 ZMAT2Q96NC0 199 aaKnown RBP24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 VN1R3Q9BXE9 311 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 TMEM206Q9H813 350 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 CNTN3Q9P232 1028 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 CACNG4Q9UBN1 327 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 PCDHGC5Q9Y5F6 944 aa24.8■■□□□ 1.56
SFSWAP-204ENST00000535399 F8W810 466 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 CXCL8P10145 99 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 KCNE1P15382 129 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 FAM160A1Q05DH4 1040 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 DPYDQ12882 1025 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 KMT5BQ4FZB7 885 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 DDX53Q86TM3 631 aaKnown RBP24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 SYCP3Q8IZU3 236 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 ZNF507Q8TCN5 953 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 SCFD1Q8WVM8 642 aa24.79■■□□□ 1.56
SFSWAP-204ENST00000535399 PRUNE2Q8WUY3 3088 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 CASTOR2A6NHX0 329 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 GADD45BO75293 160 aaPredicted RBP24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 POSTNQ15063 836 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 ENOX2Q16206 610 aaKnown RBP24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 POMGNT1Q8WZA1 660 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 RABGGTAQ92696 567 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 PAAF1Q9BRP4 392 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 COLEC11Q9BWP8 271 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 PLEKHA5Q9HAU0 1116 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 SLC39A2Q9NP94 309 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 PRDM6Q9NQX0 595 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 EXOC1Q9NV70 894 aa24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 CPSF3Q9UKF6 684 aaKnown RBP24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 AGO2Q9UKV8 859 aaKnown RBP24.78■■□□□ 1.56
SFSWAP-204ENST00000535399 TTC26A0AVF1 554 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 NR1I2O75469 434 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 EFEMP2O95967 443 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 RPN1P04843 607 aaKnown RBP24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 ADRB2P07550 413 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 PDE12Q6L8Q7 609 aaKnown RBP24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 ADGRD2Q7Z7M1 963 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 TCF25Q9BQ70 676 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 UBE4BO95155 1302 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 PLXNA4Q9HCM2 1894 aa24.77■■□□□ 1.56
SFSWAP-204ENST00000535399 GARTP22102 1010 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 ACOT2P49753 483 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 SOX4Q06945 474 aaPredicted RBP24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 STK4Q13043 487 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 BMT2Q1RMZ1 405 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 PLPP4Q5VZY2 271 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 KANK3Q6NY19 840 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 VPS52Q8N1B4 723 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 MICAL1Q8TDZ2 1067 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 ZBP1Q9H171 429 aa24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 RPF1Q9H9Y2 349 aaKnown RBP24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 NGRNQ9NPE2 291 aaKnown RBP24.76■■□□□ 1.55
SFSWAP-204ENST00000535399 LACTBL1A8MY62 500 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 HYAL1Q12794 435 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 PSMD2Q13200 908 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 HSP90AA2PQ14568 343 aaPredicted RBP24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 SKIV2LQ15477 1246 aaKnown RBP24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 CRELD2Q6UXH1 353 aaPredicted RBP24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 TMC7Q7Z402 723 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 RNF168Q8IYW5 571 aaPredicted RBP24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 KIAA0895Q8NCT3 520 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 C18orf25Q96B23 403 aaPredicted RBP24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 CBWD1Q9BRT8 395 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 ENTPD7Q9NQZ7 604 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 SLC38A7Q9NVC3 462 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 REV3LO60673 3130 aa24.75■■□□□ 1.55
SFSWAP-204ENST00000535399 TGFB1I1O43294 461 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 CTSAP10619 480 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 COL19A1Q14993 1142 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 NELFCDQ8IXH7 590 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 ZSWIM2Q8NEG5 633 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 CCDC34Q96HJ3 373 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 TIGD1Q96MW7 591 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 GOLGA2P5Q9HBQ8 144 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 STK39Q9UEW8 545 aa24.74■■□□□ 1.55
SFSWAP-204ENST00000535399 HIDE1A8MVS5 230 aa24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 RHOBTB3O94955 611 aa24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 KIF4AO95239 1232 aa24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 GTF2F1P35269 517 aaKnown RBP eCLIP24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 POU5F1Q01860 360 aaKnown RBP24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 PPP2R3AQ06190 1150 aa24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 SPAG1Q07617 926 aa24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 SMC1AQ14683 1233 aaKnown RBP24.73■■□□□ 1.55
SFSWAP-204ENST00000535399 ZBTB6Q15916 424 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms