RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LAG3P18627 525 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 IBSPP21815 317 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-206ENST00000531480 TNFSF9P41273 254 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 SCNN1GP51170 649 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 MYBPC2Q14324 1141 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 NFKBIBQ15653 356 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 ENOX2Q16206 610 aaKnown RBP15.77■□□□□ 0.12
CPSF1-206ENST00000531480 EPC2Q52LR7 807 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 ZBTB41Q5SVQ8 909 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 RBM43Q6ZSC3 357 aaKnown RBP15.77■□□□□ 0.12
CPSF1-206ENST00000531480 ZNF280BQ86YH2 543 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 NELFCDQ8IXH7 590 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 COLGALT2Q8IYK4 626 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 TRIML1Q8N9V2 468 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 GOLGA5Q8TBA6 731 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 MYLIPQ8WY64 445 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 APOL6Q9BWW8 343 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 DMAC2Q9NW81 257 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 KLK14Q9P0G3 267 aa15.77■□□□□ 0.12
CPSF1-206ENST00000531480 SMIM28A0A1B0GU29 152 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 EPOPA6NHQ4 379 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 H3BNC9 293 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 CXCL8P10145 99 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 YARSP54577 528 aaKnown RBP15.76■□□□□ 0.11
CPSF1-206ENST00000531480 OSTNP61366 133 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 ZBTB6Q15916 424 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 SEZ6Q53EL9 994 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 ARMCX5Q6P1M9 558 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 HS2ST1Q7LGA3 356 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 CD302Q8IX05 232 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 ADSSL1Q8N142 457 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 COLGALT1Q8NBJ5 622 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 ZSWIM2Q8NEG5 633 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 ZMAT2Q96NC0 199 aaKnown RBP15.76■□□□□ 0.11
CPSF1-206ENST00000531480 CDX2Q99626 313 aaPredicted RBP15.76■□□□□ 0.11
CPSF1-206ENST00000531480 TMEM175Q9BSA9 504 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 NUP62CLQ9H1M0 184 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 INPP5FQ9Y2H2 1132 aa15.76■□□□□ 0.11
CPSF1-206ENST00000531480 EXTL3O43909 919 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 LPXNO60711 386 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 EFEMP2O95967 443 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 POMCP01189 267 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 THP07101 528 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 GALTP07902 379 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 HARSP12081 509 aaKnown RBP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 POU3F3P20264 500 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 PRCPP42785 496 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 MATR3P43243 847 aaKnown RBP eCLIP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 MCCD1P59942 119 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 PLCB3Q01970 1234 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 TUSC3Q13454 348 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 GRIN2CQ14957 1233 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 CAMK4Q16566 473 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 CENPPQ6IPU0 288 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 FOXR2Q6PJQ5 311 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 KCNT2Q6UVM3 1135 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 SMYD4Q8IYR2 804 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 GPD1LQ8N335 351 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 RPS6KC1Q96S38 1066 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 ASB7Q9H672 318 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 KIAA1586Q9HCI6 787 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 AAASQ9NRG9 546 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 HSPBP1Q9NZL4 362 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 DNAJB4Q9UDY4 337 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.75■□□□□ 0.11
CPSF1-206ENST00000531480 COL6A3P12111 3177 aa15.75■□□□□ 0.11
CPSF1-206ENST00000531480 PPM1AP35813 382 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 PPP1R2P41236 205 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 ACOT2P49753 483 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 BCAR1P56945 870 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 EDRF1Q3B7T1 1238 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 BRSK2Q8IWQ3 736 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 ZC3H3Q8IXZ2 948 aaKnown RBP15.74■□□□□ 0.11
CPSF1-206ENST00000531480 SLC39A11Q8N1S5 342 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 FBXO22Q8NEZ5 403 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 ZNF558Q96NG5 402 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 C11orf84Q9BUA3 381 aaPredicted RBP15.74■□□□□ 0.11
CPSF1-206ENST00000531480 RPF1Q9H9Y2 349 aaKnown RBP15.74■□□□□ 0.11
CPSF1-206ENST00000531480 DERAQ9Y315 318 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 PCDHB12Q9Y5F1 795 aa15.74■□□□□ 0.11
CPSF1-206ENST00000531480 LACTBL1A8MY62 500 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 PPP1R3GB7ZBB8 358 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 ZC3H11AO75152 810 aaKnown RBP eCLIP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 CD44P16070 742 aaKnown RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 CYP3A5P20815 502 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 CTNNB1P35222 781 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 SLC11A1P49279 550 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 ALDH7A1P49419 539 aaKnown RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 RNASELQ05823 741 aaKnown RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 SOX4Q06945 474 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 HSP90AA2PQ14568 343 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 KLHL23Q8NBE8 558 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 XXYLT1Q8NBI6 393 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 SYAP1Q96A49 352 aaPredicted RBP15.73■□□□□ 0.11
CPSF1-206ENST00000531480 SAAL1Q96ER3 474 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 FAM213AQ9BRX8 229 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 PCIF1Q9H4Z3 704 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 SLC38A7Q9NVC3 462 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 MAPK8IP1Q9UQF2 711 aa15.73■□□□□ 0.11
CPSF1-206ENST00000531480 LZTS1Q9Y250 596 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms