RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 KRTAP10-2P60368 255 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 ADAM8P78325 824 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 BTKQ06187 659 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 NFATC3Q12968 1075 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 EIF4HQ15056 248 aaKnown RBP4.01□□□□□ -1.77
CD44-229ENST00000528672 CNN3Q15417 329 aaKnown RBP4.01□□□□□ -1.77
CD44-229ENST00000528672 CSRP2Q16527 193 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 DGKDQ16760 1214 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 UBXN11Q5T124 520 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 TRIM68Q6AZZ1 485 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 Q6ZUG5 572 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 DAAM2Q86T65 1068 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 GGNQ86UU5 652 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 ZNF354CQ86Y25 554 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 CALML6Q8TD86 181 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 POF1BQ8WVV4 589 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 CFHR4Q92496 578 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 RPGRQ92834 1020 aaKnown RBP4.01□□□□□ -1.77
CD44-229ENST00000528672 SGCZQ96LD1 299 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 GNRHR2Q96P88 292 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 CGRRF1Q99675 332 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 MYOCQ99972 504 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 KMT5AQ9NQR1 393 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 TRMT13Q9NUP7 481 aaKnown RBP4.01□□□□□ -1.77
CD44-229ENST00000528672 POLR3BQ9NW08 1133 aaPredicted RBP4.01□□□□□ -1.77
CD44-229ENST00000528672 KCMF1Q9P0J7 381 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 LUZP4Q9P127 313 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 FNIP2Q9P278 1114 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 IPPQ9Y573 584 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 PCDHB1Q9Y5F3 818 aa4.01□□□□□ -1.77
CD44-229ENST00000528672 A0A1W2PR48 441 aa4□□□□□ -1.77
CD44-229ENST00000528672 CFAP69A5D8W1 941 aa4□□□□□ -1.77
CD44-229ENST00000528672 PIP5K1CO60331 668 aa4□□□□□ -1.77
CD44-229ENST00000528672 PRAMEF4O60810 478 aa4□□□□□ -1.77
CD44-229ENST00000528672 CYP1A1P04798 512 aaPredicted RBP4□□□□□ -1.77
CD44-229ENST00000528672 TYRP1P17643 537 aa4□□□□□ -1.77
CD44-229ENST00000528672 CD53P19397 219 aa4□□□□□ -1.77
CD44-229ENST00000528672 MCCP23508 829 aa4□□□□□ -1.77
CD44-229ENST00000528672 CTSSP25774 331 aa4□□□□□ -1.77
CD44-229ENST00000528672 POLD1P28340 1107 aa4□□□□□ -1.77
CD44-229ENST00000528672 CASRP41180 1078 aa4□□□□□ -1.77
CD44-229ENST00000528672 IL12RB1P42701 662 aa4□□□□□ -1.77
CD44-229ENST00000528672 ETV4P43268 484 aa4□□□□□ -1.77
CD44-229ENST00000528672 AGFG1P52594 562 aaKnown RBP4□□□□□ -1.77
CD44-229ENST00000528672 EPHB4P54760 987 aa4□□□□□ -1.77
CD44-229ENST00000528672 EFEMP1Q12805 493 aa4□□□□□ -1.77
CD44-229ENST00000528672 MALLQ13021 153 aa4□□□□□ -1.77
CD44-229ENST00000528672 CCDC157Q569K6 752 aa4□□□□□ -1.77
CD44-229ENST00000528672 MUM1L1Q5H9M0 696 aa4□□□□□ -1.77
CD44-229ENST00000528672 ANKS6Q68DC2 871 aa4□□□□□ -1.77
CD44-229ENST00000528672 KLHDC10Q6PID8 442 aa4□□□□□ -1.77
CD44-229ENST00000528672 CLEC14AQ86T13 490 aa4□□□□□ -1.77
CD44-229ENST00000528672 DPP9Q86TI2 863 aa4□□□□□ -1.77
CD44-229ENST00000528672 CNPY4Q8N129 248 aa4□□□□□ -1.77
CD44-229ENST00000528672 KRT78Q8N1N4 520 aa4□□□□□ -1.77
CD44-229ENST00000528672 CDYL2Q8N8U2 506 aa4□□□□□ -1.77
CD44-229ENST00000528672 DEPTORQ8TB45 409 aa4□□□□□ -1.77
CD44-229ENST00000528672 LRTOMTQ8WZ04 291 aa4□□□□□ -1.77
CD44-229ENST00000528672 HOXB13Q92826 284 aaPredicted RBP4□□□□□ -1.77
CD44-229ENST00000528672 HDAC10Q969S8 669 aa4□□□□□ -1.77
CD44-229ENST00000528672 DMRTA2Q96SC8 542 aa4□□□□□ -1.77
CD44-229ENST00000528672 GPHA2Q96T91 129 aa4□□□□□ -1.77
CD44-229ENST00000528672 DPYSL5Q9BPU6 564 aa4□□□□□ -1.77
CD44-229ENST00000528672 LRFN3Q9BTN0 628 aa4□□□□□ -1.77
CD44-229ENST00000528672 ADI1Q9BV57 179 aa4□□□□□ -1.77
CD44-229ENST00000528672 SEC61A2Q9H9S3 476 aa4□□□□□ -1.77
CD44-229ENST00000528672 RSAD1Q9HA92 442 aa4□□□□□ -1.77
CD44-229ENST00000528672 ARFGAP3Q9NP61 516 aa4□□□□□ -1.77
CD44-229ENST00000528672 CASS4Q9NQ75 786 aa4□□□□□ -1.77
CD44-229ENST00000528672 SAE1Q9UBE0 346 aaPredicted RBP4□□□□□ -1.77
CD44-229ENST00000528672 HECAQ9UBI9 543 aaPredicted RBP4□□□□□ -1.77
CD44-229ENST00000528672 ANAPC4Q9UJX5 808 aa4□□□□□ -1.77
CD44-229ENST00000528672 LRCH1Q9Y2L9 728 aa4□□□□□ -1.77
CD44-229ENST00000528672 MORC2Q9Y6X9 1032 aaPredicted RBP4□□□□□ -1.77
CD44-229ENST00000528672 RHPN2P1A8MT19 583 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RASA4BC9J798 803 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RASA4O43374 803 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 PRICKLE3O43900 615 aaPredicted RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 AKR1B10O60218 316 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 TOX4O94842 621 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 AMY1AP04745 511 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 ITGB3P05106 788 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 RPLP2P05387 115 aaKnown RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 PCSK1P29120 753 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 WASP42768 502 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 MCAMP43121 646 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 GPSM2P81274 684 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 DSC2Q02487 901 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 TARDBPQ13148 414 aaKnown RBP eCLIP3.99□□□□□ -1.77
CD44-229ENST00000528672 TRIM14Q14142 442 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 PDCD2Q16342 344 aaPredicted RBP3.99□□□□□ -1.77
CD44-229ENST00000528672 ZNF827Q17R98 1081 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 THEMIS2Q5TEJ8 643 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 PPP4R3AQ6IN85 833 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 SWSAP1Q6NVH7 229 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 MIGA2Q7L4E1 593 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 MAEAQ7L5Y9 396 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 BMP8AQ7Z5Y6 402 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 XYLT1Q86Y38 959 aa3.99□□□□□ -1.77
CD44-229ENST00000528672 KBTBD2Q8IY47 623 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms