RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CAVIN2O95810 425 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 ADRB2P07550 413 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 MLH1P40692 756 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 SEZ6Q53EL9 994 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 CDKAL1Q5VV42 579 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 SLFN12LQ6IEE8 588 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 GLB1LQ6UWU2 654 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 CRELD2Q6UXH1 353 aaPredicted RBP16.68■□□□□ 0.26
LSM1-203ENST00000520755 TMEM192Q8IY95 271 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 CSGALNACT2Q8N6G5 542 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 RNF214Q8ND24 703 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 ZNF689Q96CS4 500 aaPredicted RBP16.68■□□□□ 0.26
LSM1-203ENST00000520755 FBXL18Q96ME1 805 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 CASD1Q96PB1 797 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 ANP32EQ9BTT0 268 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 TMEM117Q9H0C3 514 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 SAMSN1Q9NSI8 373 aaKnown RBP16.68■□□□□ 0.26
LSM1-203ENST00000520755 KLK14Q9P0G3 267 aa16.68■□□□□ 0.26
LSM1-203ENST00000520755 OFD1O75665 1012 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 AKAP3O75969 853 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 RECQL4O94761 1208 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 TNFSF9P41273 254 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 GRM5P41594 1212 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 WNT7BP56706 349 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 FKBP3Q00688 224 aaKnown RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 MYBPC2Q14324 1141 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 CBWD2Q8IUF1 395 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 CMTR2Q8IYT2 770 aaKnown RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 FIBCD1Q8N539 461 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 SP7Q8TDD2 431 aaPredicted RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 TIFAQ96CG3 184 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 LRCH3Q96II8 777 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 GAD1Q99259 594 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 CCDC94Q9BW85 323 aaPredicted RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 SRRTQ9BXP5 876 aaKnown RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 UBN1Q9NPG3 1134 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 FANCLQ9NW38 375 aa16.67■□□□□ 0.26
LSM1-203ENST00000520755 AGO2Q9UKV8 859 aaKnown RBP16.67■□□□□ 0.26
LSM1-203ENST00000520755 ARL5CA6NH57 179 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 OGTO15294 1046 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 ARHGEF15O94989 841 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 ZNF18P17022 549 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 AFF1P51825 1210 aaKnown RBP16.66■□□□□ 0.26
LSM1-203ENST00000520755 YARSP54577 528 aaKnown RBP16.66■□□□□ 0.26
LSM1-203ENST00000520755 ADAM9Q13443 819 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 HSP90AA4PQ58FG1 418 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 NOMO2Q5JPE7 1267 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 PPP2R2DQ66LE6 453 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 LRRC43Q8N309 656 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 GPD1LQ8N335 351 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 XXYLT1Q8NBI6 393 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 URGCPQ8TCY9 931 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 NOC3LQ8WTT2 800 aaKnown RBP16.66■□□□□ 0.26
LSM1-203ENST00000520755 ZFP42Q96MM3 310 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 CEP63Q96MT8 703 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 ACAP3Q96P50 834 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 SLC28A3Q9HAS3 691 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 HCSTQ9UBK5 93 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 CPSF3Q9UKF6 684 aaKnown RBP16.66■□□□□ 0.26
LSM1-203ENST00000520755 GIT1Q9Y2X7 761 aa16.66■□□□□ 0.26
LSM1-203ENST00000520755 MRPL42Q9Y6G3 142 aaKnown RBP16.66■□□□□ 0.26
LSM1-203ENST00000520755 LINC01553A4QN01 128 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 KIAA0391O15091 583 aaKnown RBP16.65■□□□□ 0.26
LSM1-203ENST00000520755 SLC16A3O15427 465 aaKnown RBP16.65■□□□□ 0.26
LSM1-203ENST00000520755 EXTL3O43909 919 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 EXOC3O60645 756 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 POMCP01189 267 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 ACOT2P49753 483 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 SCNN1GP51170 649 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 TAP1Q03518 808 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 SPOUT1Q5T280 376 aaKnown RBP16.65■□□□□ 0.26
LSM1-203ENST00000520755 CEP135Q66GS9 1140 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 PLEKHO2Q8TD55 490 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 BORCS6Q96GS4 357 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 RPS6KC1Q96S38 1066 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 FAM213AQ9BRX8 229 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 MRPL9Q9BYD2 267 aaKnown RBP16.65■□□□□ 0.26
LSM1-203ENST00000520755 THAP9Q9H5L6 903 aa16.65■□□□□ 0.26
LSM1-203ENST00000520755 CETN3O15182 167 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 ATP1A3P13637 1013 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 RPL13P26373 211 aaKnown RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 RNASELQ05823 741 aaKnown RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 ENOX2Q16206 610 aaKnown RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 SNRNP35Q16560 246 aaKnown RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 SPRED2Q7Z698 418 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 FILIP1Q7Z7B0 1213 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 BRSK2Q8IWQ3 736 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 CNOT6LQ96LI5 555 aaKnown RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 MKNK1Q9BUB5 465 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 CXCL16Q9H2A7 254 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 TOPORSQ9NS56 1045 aaPredicted RBP16.64■□□□□ 0.25
LSM1-203ENST00000520755 TBC1D13Q9NVG8 400 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 MIOSQ9NXC5 875 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 MTUS1Q9ULD2 1270 aa16.64■□□□□ 0.25
LSM1-203ENST00000520755 SMTNL1A8MU46 457 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 TULP1O00294 542 aaPredicted RBP16.63■□□□□ 0.25
LSM1-203ENST00000520755 MAPK13O15264 365 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 CLTAP09496 248 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 CXCL8P10145 99 aa16.63■□□□□ 0.25
LSM1-203ENST00000520755 MARSP56192 900 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms