RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NPR1P16066 1061 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 ZNF28P17035 718 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 ABCB4P21439 1286 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 GUCY1A2P33402 732 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 STT3AP46977 705 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 ATP8B2P98198 1209 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 FMO1Q01740 532 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 MTM1Q13496 603 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 CNGA2Q16280 664 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 KHDC1LQ5JSQ8 128 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 TRMT2AQ8IZ69 625 aaKnown RBP9.02□□□□□ -0.97
LSM1-202ENST00000520286 REPS2Q8NFH8 660 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 BRIX1Q8TDN6 353 aaKnown RBP9.02□□□□□ -0.97
LSM1-202ENST00000520286 STON2Q8WXE9 905 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 GCDHQ92947 438 aaPredicted RBP9.02□□□□□ -0.97
LSM1-202ENST00000520286 KIAA1191Q96A73 305 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 PNPLA8Q9NP80 782 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 SPATA6Q9NWH7 488 aaPredicted RBP9.02□□□□□ -0.97
LSM1-202ENST00000520286 PADI4Q9UM07 663 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 PCDHA6Q9UN73 950 aa9.02□□□□□ -0.97
LSM1-202ENST00000520286 RBM8AQ9Y5S9 174 aaKnown RBP9.02□□□□□ -0.97
LSM1-202ENST00000520286 POM121BA6NF01 834 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 PIP5K1CO60331 668 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 GYPEP15421 78 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 PTPN7P35236 360 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 MRE11P49959 708 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 CTXN1P60606 82 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 TRIM14Q14142 442 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 ARTNQ5T4W7 220 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 CELF5Q8N6W0 485 aaKnown RBP9.01□□□□□ -0.97
LSM1-202ENST00000520286 FBXO18Q8NFZ0 1043 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 UNKQ9C0B0 810 aaKnown RBP9.01□□□□□ -0.97
LSM1-202ENST00000520286 GCM1Q9NP62 436 aa9.01□□□□□ -0.97
LSM1-202ENST00000520286 PIH1D1Q9NWS0 290 aaKnown RBP9.01□□□□□ -0.97
LSM1-202ENST00000520286 CTDP1Q9Y5B0 961 aaPredicted RBP9.01□□□□□ -0.97
LSM1-202ENST00000520286 MORC2Q9Y6X9 1032 aaPredicted RBP9.01□□□□□ -0.97
LSM1-202ENST00000520286 NT5C1B-RDH14C9J2C7 533 aa9□□□□□ -0.97
LSM1-202ENST00000520286 TBX3O15119 743 aa9□□□□□ -0.97
LSM1-202ENST00000520286 FGAP02671 866 aa9□□□□□ -0.97
LSM1-202ENST00000520286 TYRP1P17643 537 aa9□□□□□ -0.97
LSM1-202ENST00000520286 PCSK1P29120 753 aa9□□□□□ -0.97
LSM1-202ENST00000520286 PRDX5P30044 214 aa9□□□□□ -0.97
LSM1-202ENST00000520286 PPM1AP35813 382 aa9□□□□□ -0.97
LSM1-202ENST00000520286 DUSP2Q05923 314 aa9□□□□□ -0.97
LSM1-202ENST00000520286 CIAPIN1Q6FI81 312 aa9□□□□□ -0.97
LSM1-202ENST00000520286 PPP1R3BQ86XI6 285 aa9□□□□□ -0.97
LSM1-202ENST00000520286 LIX1LQ8IVB5 337 aa9□□□□□ -0.97
LSM1-202ENST00000520286 CASKIN2Q8WXE0 1202 aa9□□□□□ -0.97
LSM1-202ENST00000520286 LPPQ93052 612 aa9□□□□□ -0.97
LSM1-202ENST00000520286 SLC7A6OSQ96CW6 309 aaPredicted RBP9□□□□□ -0.97
LSM1-202ENST00000520286 KATNBL1Q9H079 304 aa9□□□□□ -0.97
LSM1-202ENST00000520286 KIAA1683Q9H0B3 1180 aa9□□□□□ -0.97
LSM1-202ENST00000520286 FAM53CQ9NYF3 392 aa9□□□□□ -0.97
LSM1-202ENST00000520286 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9□□□□□ -0.97
LSM1-202ENST00000520286 CPNE7Q9UBL6 633 aa9□□□□□ -0.97
LSM1-202ENST00000520286 CDC23Q9UJX2 597 aa9□□□□□ -0.97
LSM1-202ENST00000520286 F2RL2O00254 374 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 DDX3XO00571 662 aaKnown RBP eCLIP8.99□□□□□ -0.972e-7■■■■■ 39.2
LSM1-202ENST00000520286 NPHP1O15259 732 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 TOX4O94842 621 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 IL18RAPO95256 599 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 IL2RBP14784 551 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 FPR1P21462 350 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 RPL13P26373 211 aaKnown RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 IL6STP40189 918 aaPredicted RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 RRADP55042 308 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 SUMO3P55854 103 aaPredicted RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 TNFAIP2Q03169 654 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 DAG1Q14118 895 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 Q6ZUG5 572 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 SYDE1Q6ZW31 735 aaPredicted RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 SESTD1Q86VW0 696 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 FAM90A1Q86YD7 464 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 REXO1L1PQ8IX06 675 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 ZDHHC14Q8IZN3 488 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 CCDC33Q8N5R6 958 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 SUCLG2Q96I99 432 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 MRGPRX1Q96LB2 322 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 CARD11Q9BXL7 1154 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 MRPL46Q9H2W6 279 aaKnown RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8.99□□□□□ -0.97
LSM1-202ENST00000520286 ACTL7AQ9Y615 435 aa8.99□□□□□ -0.97
LSM1-202ENST00000520286 CARMIL2Q6F5E8 1435 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 PPFIA4O75335 1185 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 TSHRP16473 764 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 JUNBP17275 347 aaPredicted RBP8.98□□□□□ -0.97
LSM1-202ENST00000520286 PPM1FP49593 454 aaPredicted RBP8.98□□□□□ -0.97
LSM1-202ENST00000520286 ZNF827Q17R98 1081 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 PRAMEF14Q5SWL7 426 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 TMEFF1Q8IYR6 380 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 CPXCR1Q8N123 301 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 MDM1Q8TC05 714 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 FNIP1Q8TF40 1166 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 ZC3H10Q96K80 434 aaKnown RBP8.98□□□□□ -0.97
LSM1-202ENST00000520286 LUZP4Q9P127 313 aa8.98□□□□□ -0.97
LSM1-202ENST00000520286 F8W8V4 182 aa8.97□□□□□ -0.97
LSM1-202ENST00000520286 MTSS1O43312 755 aa8.97□□□□□ -0.97
LSM1-202ENST00000520286 SH3BP5O60239 455 aa8.97□□□□□ -0.97
LSM1-202ENST00000520286 AHSGP02765 367 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms