RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 IL33O95760 270 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX58O95786 925 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 BAG2O95816 211 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 AGR2O95994 175 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZBED1O96006 694 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KNG1P01042 644 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GASTP01350 101 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LMNAP02545 664 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLA2G1BP04054 148 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SOD2P04179 222 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CAPNS1P04632 268 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPN1P04843 607 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 C8BP07358 591 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 HNRNPCP07910 306 aaKnown RBP eCLIP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 JMJD7P0C870 316 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM200BP0CF97 657 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SRGNP10124 158 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYBL2P10244 700 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PF4V1P10720 104 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALAS1P13196 640 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RHCEP18577 417 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPL17P18621 184 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNFAIP3P21580 790 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FBLP22087 321 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FBLN1P23142 703 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPS6KB1P23443 525 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CERS1P27544 350 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SERPINB3P29508 390 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CXCR5P32302 372 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MSX2P35548 267 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MC3RP41968 323 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 STAT5AP42229 794 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ECE1P42892 770 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GLRBP48167 497 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TM4SF4P48230 202 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LSSP48449 732 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDK8P49336 464 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FNTBP49356 437 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR15P49685 360 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ALDH5A1P51649 535 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNQ1P51787 676 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLGP54098 1239 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLNS1AP54105 237 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TERF1P54274 439 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CACNB3P54284 484 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 EPHA5P54756 1037 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RRADP55042 308 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MLLT6P55198 1093 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NAP1L1P55209 391 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARL4CP56559 192 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SESN3P58005 492 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL2P60568 153 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERVK-21P61565 698 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPP2R2AP63151 447 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM193AP78312 1265 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPSM2P81274 684 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMPRSS15P98073 1019 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PFKPQ01813 784 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MEF2AQ02078 507 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GUCY1A3Q02108 690 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GUCY1B3Q02153 619 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RHDQ02161 417 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DUSP2Q05923 314 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DBPQ10586 325 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FSTL1Q12841 308 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRKG2Q13237 762 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFIT5Q13325 482 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MPP3Q13368 585 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TUSC3Q13454 348 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ICAM4Q14773 271 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GRM3Q14832 879 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 EIF4HQ15056 248 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCBP1Q15365 356 aaKnown RBP eCLIP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TERF2Q15554 542 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TESK1Q15569 626 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 EZH2Q15910 746 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SEPT7Q16181 437 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LONRF1Q17RB8 773 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 BMT2Q1RMZ1 405 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CR1LQ2VPA4 569 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NBPF8Q3BBV2 869 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATP13A4Q4VNC1 1196 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC92Q53HC0 331 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RABL3Q5HYI8 236 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DGKKQ5KSL6 1271 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTC38Q5R3I4 469 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 AKNAD1Q5T1N1 836 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PXDC1Q5TGL8 231 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RASIP1Q5U651 963 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 AGBL4Q5VU57 503 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 YOD1Q5VVQ6 348 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATA1Q5VX52 437 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CD276Q5ZPR3 534 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DENND2CQ68D51 928 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDCA2Q69YH5 1023 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CYB5RLQ6IPT4 315 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 RETSATQ6NUM9 610 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCTN3Q6NUS6 607 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZCCHC8Q6NZY4 707 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PGBD2Q6P3X8 592 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms