RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SMC4Q9NTJ3 1288 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 GPRC5DQ9NZD1 345 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 HSPBP1Q9NZL4 362 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 PPARGC1AQ9UBK2 798 aaKnown RBP6.42□□□□□ -1.38
NUP54-218ENST00000515460 FEZ2Q9UHY8 353 aaPredicted RBP6.42□□□□□ -1.38
NUP54-218ENST00000515460 ANKRD31Q8N7Z5 1873 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 RAD50Q92878 1312 aa6.42□□□□□ -1.38
NUP54-218ENST00000515460 BCORQ6W2J9 1755 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 ALPK3Q96L96 1907 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 CYSRT1A8MQ03 144 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 NAT1P18440 290 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 SUMO1P63165 101 aaKnown RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 MTA1Q13330 715 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 NFE2L2Q16236 605 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 HS1BP3Q53T59 392 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 YOD1Q5VVQ6 348 aaPredicted RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 ZNF585AQ6P3V2 769 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 KIF6Q6ZMV9 814 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 RINLQ6ZS11 566 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 MOB2Q70IA6 237 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 CIR1Q86X95 450 aaPredicted RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 UHMK1Q8TAS1 419 aaKnown RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 RPGRQ92834 1020 aaKnown RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 KCNJ15Q99712 375 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 PAIP2Q9BPZ3 127 aaKnown RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 RTFDC1Q9BY42 306 aaPredicted RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 KRTAP17-1Q9BYP8 105 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 TTYH1Q9H313 450 aaPredicted RBP6.41□□□□□ -1.38
NUP54-218ENST00000515460 DEF6Q9H4E7 631 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 PFDN2Q9UHV9 154 aa6.41□□□□□ -1.38
NUP54-218ENST00000515460 POLR2AP24928 1970 aaKnown RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 SCN7AQ01118 1682 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 TRBV23-1A0A0A0MS06 115 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 MED19A0JLT2 244 aaPredicted RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 BLACEA4D250 179 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 GPR42O15529 346 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ANXA1P04083 346 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 XRCC6P12956 609 aaKnown RBP eCLIP6.4□□□□□ -1.38
NUP54-218ENST00000515460 C6P13671 934 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 EIF2S2P20042 333 aaKnown RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 CXCL9Q07325 125 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 NFATC3Q12968 1075 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 SF3A1Q15459 793 aaKnown RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 CCDC96Q2M329 555 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 PROSER3Q2NL68 480 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 VASNQ6EMK4 673 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 PPP1R42Q7Z4L9 355 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ANKRD23Q86SG2 305 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 MTDHQ86UE4 582 aaKnown RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 PALM2Q8IXS6 379 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ZBTB38Q8NAP3 1195 aaPredicted RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 ATXN2LQ8WWM7 1075 aaKnown RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 CLEC4DQ8WXI8 215 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ANKS1AQ92625 1134 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 PTPRN2Q92932 1015 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ITFG2Q969R8 447 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 UIMC1Q96RL1 719 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 KLC2Q9H0B6 622 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 VPS33BQ9H267 617 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 BARX1Q9HBU1 254 aaPredicted RBP6.4□□□□□ -1.38
NUP54-218ENST00000515460 DONSONQ9NYP3 566 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 SRRDQ9UH36 339 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ATP6V0A2Q9Y487 856 aa6.4□□□□□ -1.38
NUP54-218ENST00000515460 ZNF609O15014 1411 aa6.4□□□□□ -1.39
NUP54-218ENST00000515460 SIPA1L3O60292 1781 aaPredicted RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 UQCRHLA0A096LP55 91 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 PPIP5K2O43314 1243 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 ANP32CO43423 234 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 UQCRHP07919 91 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 COL6A2P12110 1019 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 KCNJ4P48050 445 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 TUSC3Q13454 348 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 CDSNQ15517 529 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 LONRF2Q1L5Z9 754 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 PARP10Q53GL7 1025 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 ZC3H12BQ5HYM0 836 aaKnown RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 PKN3Q6P5Z2 889 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 SASS6Q6UVJ0 657 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 COPS6Q7L5N1 327 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 KRT26Q7Z3Y9 468 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 ZSCAN30Q86W11 494 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 NIM1KQ8IY84 436 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 FAM177A1Q8N128 213 aaPredicted RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 KLHL36Q8N4N3 616 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 NUDT10Q8NFP7 164 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 NUDT11Q96G61 164 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 ERO1AQ96HE7 468 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 UTP14AQ9BVJ6 771 aaKnown RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 SCAND2PQ9GZW5 306 aaPredicted RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 TSPYL4Q9UJ04 414 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 DSEQ9UL01 958 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 TSC22D4Q9Y3Q8 395 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 ABCC4O15439 1325 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 RIC1Q4ADV7 1423 aa6.39□□□□□ -1.39
NUP54-218ENST00000515460 MAP1BP46821 2468 aaKnown RBP6.39□□□□□ -1.39
NUP54-218ENST00000515460 DNAH14Q0VDD8 3507 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 ADCY3O60266 1144 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 BBOX1O75936 387 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 CKMP06732 381 aa6.38□□□□□ -1.39
NUP54-218ENST00000515460 ZNF853P0CG23 659 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms