RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SNX17Q15036 470 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 SPA17Q15506 151 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 ASIC2Q16515 512 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 EEF1DP3Q658K8 133 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 SLC27A1Q6PCB7 646 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 ENOSF1Q7L5Y1 443 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 CCAR2Q8N163 923 aaKnown RBP17.3■□□□□ 0.36
NUP54-214ENST00000514307 LMO3Q8TAP4 145 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 FAM212AQ96EL1 285 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 NT5C1BQ96P26 610 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 TSPAN18Q96SJ8 248 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 OSMRQ99650 979 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 PLEKHA5Q9HAU0 1116 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 CDHR5Q9HBB8 845 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 UBE2TQ9NPD8 197 aaPredicted RBP17.3■□□□□ 0.36
NUP54-214ENST00000514307 SPTLC3Q9NUV7 552 aa17.3■□□□□ 0.36
NUP54-214ENST00000514307 R3HCC1Q9Y3T6 440 aaKnown RBP17.3■□□□□ 0.36
NUP54-214ENST00000514307 EPHB6O15197 1021 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 CAND2O75155 1236 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 OFD1O75665 1012 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 TNNC2P02585 160 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 ANXA13P27216 316 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 YARSP54577 528 aaKnown RBP17.29■□□□□ 0.36
NUP54-214ENST00000514307 BIRC3Q13489 604 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 RAPGEF1Q13905 1077 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 ZACNQ401N2 412 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 DPY19L2P1Q6NXN4 242 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 WDR59Q6PJI9 974 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 C15orf39Q6ZRI6 1047 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 FAM43BQ6ZT52 329 aaPredicted RBP17.29■□□□□ 0.36
NUP54-214ENST00000514307 NT5DC4Q86YG4 428 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 PPP1R13LQ8WUF5 828 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 ZNF516Q92618 1163 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 ANKRD36BP1Q96IX9 119 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 CPB2Q96IY4 423 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 TRIM6Q9C030 488 aaPredicted RBP17.29■□□□□ 0.36
NUP54-214ENST00000514307 DEF6Q9H4E7 631 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 NHEJ1Q9H9Q4 299 aaPredicted RBP17.29■□□□□ 0.36
NUP54-214ENST00000514307 SIX2Q9NPC8 291 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 LUC7LQ9NQ29 371 aaKnown RBP17.29■□□□□ 0.36
NUP54-214ENST00000514307 CHST12Q9NRB3 414 aa17.29■□□□□ 0.36
NUP54-214ENST00000514307 A0A0U1RQG5 324 aaPredicted RBP17.28■□□□□ 0.36
NUP54-214ENST00000514307 SSU72P8A0A1W2PR75 194 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 KIF2AO00139 706 aaPredicted RBP17.28■□□□□ 0.36
NUP54-214ENST00000514307 GPR182O15218 404 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 FAM189A1O60320 539 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 HOXA11P31270 313 aaPredicted RBP17.28■□□□□ 0.36
NUP54-214ENST00000514307 GRM5P41594 1212 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 KLHL30Q0D2K2 578 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 SGSM1Q2NKQ1 1148 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 IQCEQ6IPM2 695 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 VPS36Q86VN1 386 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 USP38Q8NB14 1042 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 SH3TC2Q8TF17 1288 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 JAKMIP2Q96AA8 810 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 CHP1Q99653 195 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 IMPG2Q9BZV3 1241 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 STARD7Q9NQZ5 370 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 PHF24Q9UPV7 400 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 PPP2R2CQ9Y2T4 447 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 SQORQ9Y6N5 450 aa17.28■□□□□ 0.36
NUP54-214ENST00000514307 GRIN2DO15399 1336 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 SOWAHDA6NJG2 315 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 EIF3CLB5ME19 914 aaKnown RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 AKR1B10O60218 316 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 RPS6KA5O75582 802 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 CAPN15O75808 1086 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 NDUFA10O95299 355 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 SOX5P35711 763 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 THPOP40225 353 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 TNFSF9P41273 254 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 OSTNP61366 133 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 MAPK8IP2Q13387 824 aaPredicted RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 TRPC3Q13507 836 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 DRAP1Q14919 205 aaPredicted RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 ENOX2Q16206 610 aaKnown RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 SEZ6Q53EL9 994 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 ZBTB41Q5SVQ8 909 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 E4F1Q66K89 784 aaPredicted RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 PHLDB3Q6NSJ2 640 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 HACE1Q8IYU2 909 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 TNS4Q8IZW8 715 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 EIF3CQ99613 913 aaKnown RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 TRMT1Q9NXH9 659 aaKnown RBP17.27■□□□□ 0.36
NUP54-214ENST00000514307 DERAQ9Y315 318 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 FHOD1Q9Y613 1164 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 ADGRG1Q9Y653 693 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 CDY2AQ9Y6F7 541 aa17.27■□□□□ 0.36
NUP54-214ENST00000514307 LACTBL1A8MY62 500 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 ARVCFO00192 962 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 DNM1LO00429 736 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 GFPT2O94808 682 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 HLA-DRAP01903 254 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 TMEM191BP0C7N4 346 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 ZSCAN20P17040 1043 aaPredicted RBP17.26■□□□□ 0.35
NUP54-214ENST00000514307 CLCN1P35523 988 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 EIF4A3P38919 411 aaKnown RBP17.26■□□□□ 0.35
NUP54-214ENST00000514307 PIK3CAP42336 1068 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 JAM2P57087 298 aa17.26■□□□□ 0.35
NUP54-214ENST00000514307 TFAMQ00059 246 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms