RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KIAA1586Q9HCI6 787 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 RWDD2AQ9UIY3 292 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 INPPL1O15357 1258 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 RPL13P26373 211 aaKnown RBP32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 PPP2R3AQ06190 1150 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 MYBPC2Q14324 1141 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 C11orf57Q6ZUT1 292 aaPredicted RBP32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 BRSK2Q8IWQ3 736 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 RSPH1Q8WYR4 309 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 NLRC5Q86WI3 1866 aa32.21■■■□□ 2.75
LIMCH1-211ENST00000509638 LCHNA4D1U4 455 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 PTGESO14684 152 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 POMCP01189 267 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 ADRB2P07550 413 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 MYOGP15173 224 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 BTG3Q14201 252 aaPredicted RBP32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 GLRA4Q5JXX5 417 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 CEP135Q66GS9 1140 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 CMTR2Q8IYT2 770 aaKnown RBP32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 LRRC43Q8N309 656 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 RDH13Q8NBN7 331 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 GSTCDQ8NEC7 633 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 FAM212AQ96EL1 285 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 MRPL9Q9BYD2 267 aaKnown RBP32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 CNTN3Q9P232 1028 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 PLAGL2Q9UPG8 496 aa32.2■■■□□ 2.75
LIMCH1-211ENST00000509638 TTC26A0AVF1 554 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 CCDC192P0DO97 292 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 PBX2P40425 430 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 CASP4P49662 377 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 ADAM9Q13443 819 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 HSP90AA2PQ14568 343 aaPredicted RBP32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 FOXR2Q6PJQ5 311 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 DUSP9Q99956 384 aaKnown RBP32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 PBX4Q9BYU1 374 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 TBC1D13Q9NVG8 400 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 HCSTQ9UBK5 93 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 PCDHA11Q9Y5I1 949 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 ZNF233A6NK53 670 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 FKBP3Q00688 224 aaKnown RBP32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 ALKAL1Q6UXT8 129 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 LRRC55Q6ZSA7 311 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 ZC3H3Q8IXZ2 948 aaKnown RBP32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 SP7Q8TDD2 431 aaPredicted RBP32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 FUCA2Q9BTY2 467 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 DNAJC25Q9H1X3 360 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 PLEKHA5Q9HAU0 1116 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 FRMD4BQ9Y2L6 1034 aa32.19■■■□□ 2.74
LIMCH1-211ENST00000509638 LACTBL1A8MY62 500 aa32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 WNT7BP56706 349 aa32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 XKR4Q5GH76 650 aa32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 MED15Q96RN5 788 aa32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 GZF1Q9H116 711 aaPredicted RBP32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 YBX2Q9Y2T7 364 aaKnown RBP32.18■■■□□ 2.74
LIMCH1-211ENST00000509638 CDH23Q9H251 3354 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 TULP1O00294 542 aaPredicted RBP32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 CETN3O15182 167 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 AKAP3O75969 853 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 ERCC5P28715 1186 aaPredicted RBP32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 POU5F1Q01860 360 aaKnown RBP32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 RNASELQ05823 741 aaKnown RBP32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 GRIK3Q13003 919 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 CSGALNACT2Q8N6G5 542 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 ZMAT2Q96NC0 199 aaKnown RBP32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 MIOSQ9NXC5 875 aa32.17■■■□□ 2.74
LIMCH1-211ENST00000509638 CA3P07451 260 aa32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 SPAG1Q07617 926 aa32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 RAB30Q15771 203 aa32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 LRIT3Q3SXY7 679 aa32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 CT47A1Q5JQC4 288 aaPredicted RBP32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 KANSL3Q9P2N6 904 aa32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 MRPL42Q9Y6G3 142 aaKnown RBP32.16■■■□□ 2.74
LIMCH1-211ENST00000509638 SMIM28A0A1B0GU29 152 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 IL18RAPO95256 599 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 KCNE1P15382 129 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 CYP24A1Q07973 514 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 ANO6Q4KMQ2 910 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 THP07101 528 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 SMAD3P84022 425 aaKnown RBP32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 CD302Q8IX05 232 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 FAM186BQ8IYM0 893 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 FIBCD1Q8N539 461 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 KIF12Q96FN5 646 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 PPP1R10Q96QC0 940 aaKnown RBP32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 PDE11AQ9HCR9 933 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 MSRAQ9UJ68 235 aa32.15■■■□□ 2.74
LIMCH1-211ENST00000509638 B4GALT3O60512 393 aa32.14■■■□□ 2.74
LIMCH1-211ENST00000509638 NFICP08651 508 aa32.14■■■□□ 2.74
LIMCH1-211ENST00000509638 DNAJB2P25686 324 aa32.14■■■□□ 2.74
LIMCH1-211ENST00000509638 JADE1Q6IE81 842 aa32.14■■■□□ 2.74
LIMCH1-211ENST00000509638 ASB7Q9H672 318 aa32.14■■■□□ 2.74
LIMCH1-211ENST00000509638 SLC16A3O15427 465 aaKnown RBP32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 ARHGEF15O94989 841 aa32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 PSMC2P35998 433 aaKnown RBP32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 ZNF280BQ86YH2 543 aa32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 CEP63Q96MT8 703 aa32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 MKNK1Q9BUB5 465 aa32.13■■■□□ 2.73
LIMCH1-211ENST00000509638 LINC01553A4QN01 128 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 MAPK13O15264 365 aa32.12■■■□□ 2.73
LIMCH1-211ENST00000509638 ZC3H11AO75152 810 aaKnown RBP eCLIP32.12■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms