RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 LPXNO60711 386 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 GADD45BO75293 160 aaPredicted RBP9.95□□□□□ -0.82
NUP54-207ENST00000508583 FGF18O76093 207 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 MBD3O95983 291 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 PRR29P0C7W0 189 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 KCNE1P15382 129 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 POU3F3P20264 500 aaPredicted RBP9.95□□□□□ -0.82
NUP54-207ENST00000508583 IGFBP4P22692 258 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 CASP1P29466 404 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 SCNN1GP51170 649 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 OSTNP61366 133 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 PLCB3Q01970 1234 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 DSC1Q08554 894 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 PNOCQ13519 176 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 USP37Q86T82 979 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 NT5DC4Q86YG4 428 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 KLHL23Q8NBE8 558 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 SCFD1Q8WVM8 642 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 MRPL38Q96DV4 380 aaKnown RBP9.95□□□□□ -0.82
NUP54-207ENST00000508583 ZBTB45Q96K62 511 aaPredicted RBP9.95□□□□□ -0.82
NUP54-207ENST00000508583 SNX27Q96L92 541 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 ZFP42Q96MM3 310 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 GUCD1Q96NT3 240 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 CDX2Q99626 313 aaPredicted RBP9.95□□□□□ -0.82
NUP54-207ENST00000508583 COLEC11Q9BWP8 271 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 ASB7Q9H672 318 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 NRDE2Q9H7Z3 1164 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 KLK14Q9P0G3 267 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 SSX2IPQ9Y2D8 614 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 FAN1Q9Y2M0 1017 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 DERAQ9Y315 318 aa9.95□□□□□ -0.82
NUP54-207ENST00000508583 TRAPPC3O43617 180 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 CALUO43852 315 aaPredicted RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 GALTP07902 379 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 LINC00271P0C7V0 271 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 CXCL8P10145 99 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 CYP3A5P20815 502 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 PAX3P23760 479 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 RPL13P26373 211 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 RPL9P32969 192 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 OR1G1P47890 313 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 KCNA1Q09470 495 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 ELAVL2Q12926 359 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 STK4Q13043 487 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 MYBPC2Q14324 1141 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 SURF1Q15526 300 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 COBLL1Q53SF7 1204 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 XKR4Q5GH76 650 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 ZNF658Q5TYW1 1059 aaPredicted RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 SLC39A4Q6P5W5 647 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 LRRC55Q6ZSA7 311 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 NELFCDQ8IXH7 590 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 C12orf56Q8IXR9 622 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 COLGALT2Q8IYK4 626 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 GPD1LQ8N335 351 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 GUF1Q8N442 669 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 TRIML1Q8N9V2 468 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 KIAA0895Q8NCT3 520 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 SPATA20Q8TB22 786 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 GDPD5Q8WTR4 605 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 TMEM174Q8WUU8 243 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 HPS3Q969F9 1004 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 TSG101Q99816 390 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 NGRNQ9NPE2 291 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 TLR9Q9NR96 1032 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 AGPAT3Q9NRZ7 376 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 CPSF3Q9UKF6 684 aaKnown RBP9.94□□□□□ -0.82
NUP54-207ENST00000508583 PLAGL2Q9UPG8 496 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 STXBP5LQ9Y2K9 1186 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 C2CD2Q9Y426 696 aa9.94□□□□□ -0.82
NUP54-207ENST00000508583 SF3B1O75533 1304 aaKnown RBP eCLIP9.93□□□□□ -0.82
NUP54-207ENST00000508583 SMIM28A0A1B0GU29 152 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 TTC26A0AVF1 554 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ARHGEF37A1IGU5 675 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 EPOPA6NHQ4 379 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ZNF233A6NK53 670 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ANKRD63C9JTQ0 380 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 PDXKO00764 312 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 PSMA7O14818 248 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 NCK2O43639 380 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ITGB1P05556 798 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ADSSP30520 456 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 TMEM132DQ14C87 1099 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ENOX2Q16206 610 aaKnown RBP9.93□□□□□ -0.82
NUP54-207ENST00000508583 PDXDC1Q6P996 788 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 ALKAL1Q6UXT8 129 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 DDX53Q86TM3 631 aaKnown RBP9.93□□□□□ -0.82
NUP54-207ENST00000508583 ZNF280BQ86YH2 543 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 SLC39A11Q8N1S5 342 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 CEP120Q8N960 986 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 XXYLT1Q8NBI6 393 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 GSTCDQ8NEC7 633 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 BEST2Q8NFU1 509 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 NOC3LQ8WTT2 800 aaKnown RBP9.93□□□□□ -0.82
NUP54-207ENST00000508583 CACTINQ8WUQ7 758 aaKnown RBP9.93□□□□□ -0.82
NUP54-207ENST00000508583 MYLIPQ8WY64 445 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 FAM212AQ96EL1 285 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 KIF12Q96FN5 646 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 IGSF21Q96ID5 467 aa9.93□□□□□ -0.82
NUP54-207ENST00000508583 PPP1R10Q96QC0 940 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms