RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ARHGAP20Q9P2F6 1191 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 APEX2Q9UBZ4 518 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 HACL1Q9UJ83 578 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 PNMA3Q9UL41 463 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 PCDHAC2Q9Y5I4 1007 aa17.32■□□□□ 0.36
CCDC88B-209ENST00000494080 hCG_2014768A0A024R1R8 64 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 A6NJR5 290 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 PSMC6P62333 389 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 BASP1P80723 227 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 LMNB2Q03252 620 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 SLC29A2Q14542 456 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 LONRF1Q17RB8 773 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 MAP3K21Q5TCX8 1036 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 GPD1LQ8N335 351 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 RNF149Q8NC42 400 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 TUBB6Q9BUF5 446 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 ATP6V1G2O95670 118 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 GGPS1O95749 300 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 DYNC1I2Q13409 638 aaKnown RBP17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 ZNF699Q32M78 642 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 RFX8Q6ZV50 586 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 C3orf20Q8ND61 904 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 AGBL3Q8NEM8 1001 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 DTX3LQ8TDB6 740 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 DGAT1O75907 488 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 INHBAP08476 426 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CASP4P49662 377 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CTCFP49711 727 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CREG2Q8IUH2 290 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CERS5Q8N5B7 392 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 TMEM35BQ8NCS4 154 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 HIPK4Q8NE63 616 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 SLC30A5Q8TAD4 765 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 MAML1Q92585 1016 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 DLGAP2Q9P1A6 1054 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 RFC1P35251 1148 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 SURF1Q15526 300 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 PREPLQ4J6C6 727 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CENPPQ6IPU0 288 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 CCDC125Q86Z20 511 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 ERP27Q96DN0 273 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 TTC1Q99614 292 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 AGPAT1Q99943 283 aa17.31■□□□□ 0.36
CCDC88B-209ENST00000494080 WNT7AO00755 349 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SLC16A3O15427 465 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 MED7O43513 233 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SREBF1P36956 1147 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 MKRN4PQ13434 485 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SNRNP35Q16560 246 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 KCTD6Q8NC69 237 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 STK33Q9BYT3 514 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 UNC45AQ9H3U1 944 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 GPRC5CQ9NQ84 441 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 A0A087X0T9 212 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 CFAP69A5D8W1 941 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SPAG7O75391 227 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 FAM228BP0C875 321 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 PLS3P13797 630 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 DHX34Q14147 1143 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 KIAA0895Q8NCT3 520 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 NUF2Q9BZD4 464 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SNX25Q9H3E2 840 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 SAYSD1Q9NPB0 183 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 TMX2Q9Y320 296 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 LTN1O94822 1766 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 RGL2O15211 777 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 NQO1P15559 274 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 XKR3Q5GH77 459 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 MTMR8Q96EF0 704 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 TRIM55Q9BYV6 548 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 CHORDC1Q9UHD1 332 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 TMEM120BA0PK00 339 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 NFIBO00712 420 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 XPOTO43592 962 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 HAUS5O94927 633 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 MT-ND3P03897 115 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 GNA15P30679 374 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 COPB2P35606 906 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 GRAMD1BQ3KR37 738 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 DACT2Q5SW24 774 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 GMCL1Q96IK5 515 aa17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 POLR3CQ9BUI4 534 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-209ENST00000494080 PSMA2P25787 234 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 MDM2Q00987 491 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 CUL3Q13618 768 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 HP1BP3Q5SSJ5 553 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 OR6B3Q8NGW1 331 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 PIK3R5Q8WYR1 880 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 NDC80O14777 642 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 TRPA1O75762 1119 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 MYBL1P10243 752 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 COPS2P61201 443 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 DNAJC9Q8WXX5 260 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 SCINQ9Y6U3 715 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 TTLL4Q14679 1199 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 SMC1BQ8NDV3 1235 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 TEKT4Q8WW24 435 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 PNMA5Q96PV4 448 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 SSX2IPQ9Y2D8 614 aa17.29■□□□□ 0.36
CCDC88B-209ENST00000494080 CAND2O75155 1236 aa17.28■□□□□ 0.36
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