RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 TRIM65Q6PJ69 517 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 ANKRD33Q7Z3H0 272 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 APBB1IPQ7Z5R6 666 aaPredicted RBP13.72□□□□□ -0.21
VPS52-220ENST00000493674 UBE2Q1Q7Z7E8 422 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 TMEM139Q8IV31 216 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 WDR49Q8IV35 697 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 CNGA4Q8IV77 575 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 LRRC8AQ8IWT6 810 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 TMEM192Q8IY95 271 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 USP38Q8NB14 1042 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 CCDC127Q96BQ5 260 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 DNAJC7Q99615 494 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 ADPGKQ9BRR6 497 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 CRACR2AQ9BSW2 395 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 LSM14BQ9BX40 385 aaKnown RBP13.72□□□□□ -0.21
VPS52-220ENST00000493674 OSBPL7Q9BZF2 842 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 TMX1Q9H3N1 280 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 GCNT4Q9P109 453 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 CEP72Q9P209 647 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 NOD1Q9Y239 953 aa13.72□□□□□ -0.21
VPS52-220ENST00000493674 AKR1B15C9JRZ8 316 aaPredicted RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 RPS6KA5O75582 802 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 NPTXRO95502 500 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 TFRCP02786 760 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 C4BPAP04003 597 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 CXCL8P10145 99 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 SLC9A1P19634 815 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 AP3M2P53677 418 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 ZBED6P86452 979 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 NCBP1Q09161 790 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 DSC3Q14574 896 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 MBTPS1Q14703 1052 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 TMEM132AQ24JP5 1023 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 KLHDC7AQ5VTJ3 777 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 KRT39Q6A163 491 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 SV2AQ7L0J3 742 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 PPFIBP1Q86W92 1011 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 EFCAB13Q8IY85 973 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 THNSL1Q8IYQ7 743 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 BAP1Q92560 729 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 PANX2Q96RD6 677 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 POP1Q99575 1024 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 TRAIPQ9BWF2 469 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 NAA15Q9BXJ9 866 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 EIF2AQ9BY44 585 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 INTS2Q9H0H0 1204 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 AGO3Q9H9G7 860 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 CHST12Q9NRB3 414 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 FAM207AQ9NSI2 230 aaPredicted RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 PIN4Q9Y237 131 aaKnown RBP13.71□□□□□ -0.21
VPS52-220ENST00000493674 CEP290O15078 2479 aa13.71□□□□□ -0.21
VPS52-220ENST00000493674 PITPNM1O00562 1244 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 DLATP10515 647 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 TRIM21P19474 475 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 HNRNPH3P31942 346 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 GOLGA8FQ08AF8 430 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 GOLGA8DPQ0D2H9 430 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 LRMPQ12912 555 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 SLC10A6Q3KNW5 377 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 TDRD10Q5VZ19 366 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 SLC39A5Q6ZMH5 540 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 EHBP1Q8NDI1 1231 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 NEK11Q8NG66 645 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 TOX2Q96NM4 488 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 FNBP1Q96RU3 617 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 ASB7Q9H672 318 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 MMRN2Q9H8L6 949 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 RPF1Q9H9Y2 349 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.7□□□□□ -0.22
VPS52-220ENST00000493674 ST3GAL5Q9UNP4 418 aa13.7□□□□□ -0.22
VPS52-220ENST00000493674 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS52-220ENST00000493674 KIAA1671Q9BY89 1806 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 MYH10P35580 1976 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 GPR182O15218 404 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 VNN1O95497 513 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 TPM1P09493 284 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 ACTN1P12814 892 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 UCHL3P15374 230 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 RFX1P22670 979 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 ADKP55263 362 aaKnown RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 JAM2P57087 298 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 APBA1Q02410 837 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 XKR4Q5GH76 650 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 ALKAL1Q6UXT8 129 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 FAM43BQ6ZT52 329 aaPredicted RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 NT5DC4Q86YG4 428 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 CD302Q8IX05 232 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 SMG8Q8ND04 991 aaKnown RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 FBXL13Q8NEE6 735 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 CCDC112Q8NEF3 446 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 OR5B17Q8NGF7 314 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 TAS1R2Q8TE23 839 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 DIS3LQ8TF46 1054 aaKnown RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 SEMA4DQ92854 862 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 FAM84AQ96KN4 292 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 SNX27Q96L92 541 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 NXF3Q9H4D5 531 aaKnown RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 PLEKHA5Q9HAU0 1116 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 ABHD10Q9NUJ1 306 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms