RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 FAM84AQ96KN4 292 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 SNX27Q96L92 541 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 YME1L1Q96TA2 773 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 MMRN2Q9H8L6 949 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 KIAA1586Q9HCI6 787 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 PDE11AQ9HCR9 933 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 DMAC2Q9NW81 257 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 GIT1Q9Y2X7 761 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 NFE2L3Q9Y4A8 694 aa17.12■□□□□ 0.33
HPS4-216ENST00000493455 GRXCR1A8MXD5 290 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 HOXA2O43364 376 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 FGFR1OPO95684 399 aaKnown RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 KRT13P13646 458 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 AFF1P51825 1210 aaKnown RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 RABGGTBP53611 331 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 WNT7BP56706 349 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 MYL5Q02045 173 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 RNASELQ05823 741 aaKnown RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 CYP24A1Q07973 514 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 NFIL3Q16649 462 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 SLC10A6Q3KNW5 377 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 DCAF17Q5H9S7 520 aaPredicted RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 CT47A1Q5JQC4 288 aaPredicted RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 TCERG1LQ5VWI1 586 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 SPATA1Q5VX52 437 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 FAM43BQ6ZT52 329 aaPredicted RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 HERC6Q8IVU3 1022 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 RNF214Q8ND24 703 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 KIF12Q96FN5 646 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 CEP63Q96MT8 703 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 FNBP1Q96RU3 617 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 CBX8Q9HC52 389 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 UBN1Q9NPG3 1134 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 SAMSN1Q9NSI8 373 aaKnown RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 MIOSQ9NXC5 875 aa17.11■□□□□ 0.33
HPS4-216ENST00000493455 MAGEC2Q9UBF1 373 aaPredicted RBP17.11■□□□□ 0.33
HPS4-216ENST00000493455 MEFVO15553 781 aaPredicted RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 TLL1O43897 1013 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 OFD1O75665 1012 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 CLSTN1O94985 981 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 NFICP08651 508 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 ZNF445P59923 1031 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 MYBPC2Q14324 1141 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 HSP90AA2PQ14568 343 aaPredicted RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 NOMO2Q5JPE7 1267 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 SPOUT1Q5T280 376 aaKnown RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 FAM109BQ6ICB4 259 aaPredicted RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 JADE1Q6IE81 842 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 LUZP1Q86V48 1076 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 TMEM130Q8N3G9 435 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 ENOX1Q8TC92 643 aaKnown RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 CNOT6LQ96LI5 555 aaKnown RBP17.1■□□□□ 0.33
HPS4-216ENST00000493455 HCSTQ9UBK5 93 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 KIAA1671Q9BY89 1806 aa17.1■□□□□ 0.33
HPS4-216ENST00000493455 SMTNL1A8MU46 457 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 SLC16A3O15427 465 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 IL18RAPO95256 599 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 GJB5O95377 273 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 TRIM49P0CI25 452 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 TRIM49CP0CI26 452 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 TNNI1P19237 187 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 MTIF2P46199 727 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 TFAMQ00059 246 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 BTG3Q14201 252 aaPredicted RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 TMEM132DQ14C87 1099 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 FILIP1Q7Z7B0 1213 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 DHX40Q8IX18 779 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 ZC3H3Q8IXZ2 948 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 TDHQ8IZJ6 230 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 FBXL18Q96ME1 805 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 CASD1Q96PB1 797 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 FAM193BQ96PV7 902 aaPredicted RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 POP1Q99575 1024 aaKnown RBP17.09■□□□□ 0.33
HPS4-216ENST00000493455 TMEM117Q9H0C3 514 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 FANCLQ9NW38 375 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 PLAGL2Q9UPG8 496 aa17.09■□□□□ 0.33
HPS4-216ENST00000493455 SMIM28A0A1B0GU29 152 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 TTC26A0AVF1 554 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 PTGESO14684 152 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 DGKIO75912 1065 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 TMEM191BP0C7N4 346 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 VAMP7P51809 220 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 GUCY2FP51841 1108 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 DLG4P78352 724 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 RASIP1Q5U651 963 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 INTS8Q75QN2 995 aaKnown RBP17.08■□□□□ 0.32
HPS4-216ENST00000493455 FAM114A1Q8IWE2 563 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 PHOSPHO2Q8TCD6 241 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 FAM200AQ8TCP9 573 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 PLEKHO2Q8TD55 490 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 RABGGTAQ92696 567 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 C18orf25Q96B23 403 aaPredicted RBP17.08■□□□□ 0.32
HPS4-216ENST00000493455 MFSD14AQ96MC6 490 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 ZMAT2Q96NC0 199 aaKnown RBP17.08■□□□□ 0.32
HPS4-216ENST00000493455 BPIFA3Q9BQP9 254 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 ANP32EQ9BTT0 268 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 THAP9Q9H5L6 903 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 GOLGA2P5Q9HBQ8 144 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 TBC1D13Q9NVG8 400 aa17.08■□□□□ 0.32
HPS4-216ENST00000493455 CNTN3Q9P232 1028 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms