RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZBTB42B2RXF5 422 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 CCDC188H7C350 402 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 KRIT1O00522 736 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 NOP56O00567 594 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 GRIN3BO60391 1043 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 VNN1O95497 513 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 SYF2O95926 243 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 KRT5P13647 590 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 PIK3CAP42336 1068 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 GYS2P54840 703 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 MKRN4PQ13434 485 aaPredicted RBP22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 IER5Q5VY09 327 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 CCDC62Q6P9F0 684 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 PLPPR4Q7Z2D5 763 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 ATP8B4Q8TF62 1192 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 CASKIN2Q8WXE0 1202 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 CARD9Q9H257 536 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 VPS18Q9P253 973 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 FAN1Q9Y2M0 1017 aa22.68■■□□□ 1.22
CCDC88B-208ENST00000492980 ATMINO43313 823 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CYP1A2P05177 515 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 ERVK-9P63128 1117 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 WDR44Q5JSH3 913 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 LDLRAD1Q5T700 205 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 WDR78Q5VTH9 848 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 ZPBP2Q6X784 338 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CGRRF1Q99675 332 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CCDC113Q9H0I3 377 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CNTNAP2Q9UHC6 1331 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 TTLL13PA6NNM8 815 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 ITGA4P13612 1032 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 PAK2Q13177 524 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 NNTQ13423 1086 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 BIRC3Q13489 604 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 PLCB4Q15147 1175 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CDCA2Q69YH5 1023 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 ZNF771Q7L3S4 317 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 DHX37Q8IY37 1157 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 SPATA33Q96N06 139 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 CHORDC1Q9UHD1 332 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 NFU1Q9UMS0 254 aa22.67■■□□□ 1.22
CCDC88B-208ENST00000492980 IGKV6-21A0A0C4DH24 114 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 EFNA5P52803 228 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 SNAPC2Q13487 334 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 SHCBP1Q8NEM2 672 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 TCP11Q8WWU5 503 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 IFT81Q8WYA0 676 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 ALG3Q92685 438 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 COPS5Q92905 334 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 DDX47Q9H0S4 455 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 GTF3C4Q9UKN8 822 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 AGPSO00116 658 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 SART1O43290 800 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 GAS2O43903 313 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 MSCO60682 206 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 CALCAP01258 141 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 FGGP02679 453 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 LAMTOR4Q0VGL1 99 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 CLEC16AQ2KHT3 1053 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 EAPPQ56P03 285 aaPredicted RBP22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 TMEM63BQ5T3F8 832 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 SPOPLQ6IQ16 392 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 ACAD10Q6JQN1 1059 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 ZNF653Q96CK0 615 aa22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 RNPC3Q96LT9 517 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-208ENST00000492980 HARSP12081 509 aaKnown RBP22.65■■□□□ 1.22
CCDC88B-208ENST00000492980 SEZ6Q53EL9 994 aa22.65■■□□□ 1.22
CCDC88B-208ENST00000492980 LRRC71Q8N4P6 559 aa22.65■■□□□ 1.22
CCDC88B-208ENST00000492980 NUP85Q9BW27 656 aa22.65■■□□□ 1.22
CCDC88B-208ENST00000492980 ADAM21Q9UKJ8 722 aa22.65■■□□□ 1.22
CCDC88B-208ENST00000492980 LOC102724159A0A0B4J2E5 919 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 TMEM110-MUSTN1A8MSY1 372 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 MIF4GDA9UHW6 222 aaKnown RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 BHMG1C9JSJ3 638 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 FAM189A1O60320 539 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 CYP2C8P10632 490 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 GGCXP38435 758 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 PWP2Q15269 919 aaKnown RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 TRADDQ15628 312 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 TSEN2Q8NCE0 465 aaKnown RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 ZNF564Q8TBZ8 553 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 RPS6KC1Q96S38 1066 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 MRPL4Q9BYD3 311 aaKnown RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 SLITRK6Q9H5Y7 841 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 EFCC1Q9HA90 598 aa22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 APOBEC3GQ9HC16 384 aaKnown RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 ZKSCAN7Q9P0L1 754 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-208ENST00000492980 GOLGA6BA6NDN3 693 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 CLDN3O15551 220 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 PHACTR2O75167 634 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 TXNP10599 105 aaKnown RBP22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 ACO1P21399 889 aaKnown RBP22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 MXD4Q14582 209 aaPredicted RBP22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 MESDQ14696 234 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 BRSK2Q8IWQ3 736 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 EXOC8Q8IYI6 725 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 OR5B17Q8NGF7 314 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 TAF1DQ9H5J8 278 aaPredicted RBP22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 PDGFCQ9NRA1 345 aa22.64■■□□□ 1.21
CCDC88B-208ENST00000492980 TRPC6Q9Y210 931 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms