RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	TCIRG1	Q13488	830 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	EIF4A2	Q14240	407 aa	Known RBP	5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MYBPC3	Q14896	1274 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZC3H12B	Q5HYM0	836 aa	Known RBP	5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CREB3L3	Q68CJ9	461 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	FAM111B	Q6SJ93	734 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SMIM5	Q71RC9	77 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MRGPRG	Q86SM5	289 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MAML3	Q96JK9	1138 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	BOC	Q9BWV1	1114 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	HAPLN2	Q9GZV7	340 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	NCOA5	Q9HCD5	579 aa	Known RBP	5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PARPBP	Q9NWS1	579 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PTCH2	Q9Y6C5	1203 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	N4BP2	Q86UW6	1770 aa	Predicted RBP	5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CEP350	Q5VT06	3117 aa		5.37	□□□□□ -1.55
SNRNP40-205	ENST00000486941	FOXN1	O15353	648 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	STC2	O76061	302 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	NPTXR	O95502	500 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MMP10	P09238	476 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PROZ	P22891	400 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZFP36	P26651	326 aa	Known RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	FNTB	P49356	437 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	KIF11	P52732	1056 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CRHR2	Q13324	411 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	AMOT	Q4VCS5	1084 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PLEKHO1	Q53GL0	409 aa	Predicted RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MRGPRE	Q86SM8	312 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ELOA2	Q8IYF1	753 aa	Predicted RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MIEF2	Q96C03	454 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	TRPS1	Q9UHF7	1281 aa		5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	REXO2	Q9Y3B8	237 aa	Known RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CIC	Q96RK0	1608 aa	Predicted RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	COL5A3	P25940	1745 aa	Predicted RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	BRCA1	P38398	1863 aa	Known RBP	5.36	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ARFGEF1	Q9Y6D6	1849 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	KIAA1551	Q9HCM1	1747 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PXDNL	A1KZ92	1463 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	KDR	P35968	1356 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941		A0A0A6YYK5	440 aa	Predicted RBP	5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	FAM20B	O75063	409 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	HIP1R	O75146	1068 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	DNAJC8	O75937	253 aa	Predicted RBP	5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PEX11B	O96011	259 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	GYS1	P13807	737 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZNF460	Q14592	562 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ELAVL1	Q15717	326 aa	Known RBP	5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	UNQ6494/PRO21346	Q6UXR6	183 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	HTR3D	Q70Z44	454 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	RHOU	Q7L0Q8	258 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ANKRD35	Q8N283	1001 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	GPR150	Q8NGU9	434 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	THAP3	Q8WTV1	239 aa	Predicted RBP	5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	LPP	Q93052	612 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SOX7	Q9BT81	388 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	TTPAL	Q9BTX7	342 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	KANSL2	Q9H9L4	492 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SAMD15	Q9P1V8	674 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	DNAI1	Q9UI46	699 aa		5.35	□□□□□ -1.55
SNRNP40-205	ENST00000486941	C4A	P0C0L4	1744 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CLSPN	Q9HAW4	1339 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941		A0A0G2JLW4	131 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	H2AFY	O75367	372 aa	Known RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	TOMM70	O94826	608 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	TOX4	O94842	621 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	CFB	P00751	764 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	DPEP1	P16444	411 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	RFC4	P35249	363 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	TNNT2	P45379	298 aa	Predicted RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	MAP3K12	Q12852	859 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	DGKD	Q16760	1214 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SLFN12L	Q6IEE8	588 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ESRP1	Q6NXG1	681 aa	Known RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZCCHC8	Q6NZY4	707 aa	Known RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZNF530	Q6P9A1	599 aa	Predicted RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	VRK3	Q8IV63	474 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	PLA2G15	Q8NCC3	412 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	ZSWIM2	Q8NEG5	633 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	GCDH	Q92947	438 aa	Predicted RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	GFM2	Q969S9	779 aa	Known RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SRPK1	Q96SB4	655 aa	Known RBP	5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	IL23A	Q9NPF7	189 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	SBF1	O95248	1867 aa		5.34	□□□□□ -1.55
SNRNP40-205	ENST00000486941	KDM6A	O15550	1401 aa	Predicted RBP	5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	C10orf71	Q711Q0	1435 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	PTPDC1	A2A3K4	754 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	VSIG10L2	P0DP72	767 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	SDS	P20132	328 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	KCNA3	P22001	575 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	MAN2A2	P49641	1150 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	MTHFS	P49914	203 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	ROM1	Q03395	351 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	C2orf27A	Q580R0	203 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	C1orf141	Q5JVX7	400 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	KANSL1	Q7Z3B3	1105 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	PGBD4	Q96DM1	585 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	MNT	Q99583	582 aa		5.33	□□□□□ -1.56
SNRNP40-205	ENST00000486941	POLR3GL	Q9BT43	218 aa		5.33	□□□□□ -1.56

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms