RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 KYNUQ16719 465 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 QRICH1Q2TAL8 776 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 SLC30A9Q6PML9 568 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 ZNF564Q8TBZ8 553 aaPredicted RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 PARD3BQ8TEW8 1205 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 GRK7Q8WTQ7 553 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 ZBTB10Q96DT7 871 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 CRAMP1Q96RY5 1269 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 PARVGQ9HBI0 331 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 AGPAT3Q9NRZ7 376 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 SEL1LQ9UBV2 794 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 KLHL33A6NCF5 533 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 SFI1A8K8P3 1242 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 TP73O15350 636 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 GAS8O95995 478 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 TPBGLP0DKB5 382 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 PTK6Q13882 451 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 ZC2HC1CQ53FD0 456 aaPredicted RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP40-214ENST00000483519 ENDOVQ8N8Q3 282 aaKnown RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 SH3TC2Q8TF17 1288 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 MAIP1Q8WWC4 291 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 CRYGNQ8WXF5 182 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 TSC22D3Q99576 134 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 TRAIPQ9BWF2 469 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 FHDC1Q9C0D6 1143 aaPredicted RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 UBE2TQ9NPD8 197 aaPredicted RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 DMAC2Q9NW81 257 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 CPSF2Q9P2I0 782 aaKnown RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 RPL26L1Q9UNX3 145 aaKnown RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 FOCADQ5VW36 1801 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 GAKO14976 1311 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 FAM47DPA6NHR8 397 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 GZMAP12544 262 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 ATF2P15336 505 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 COG2Q14746 738 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 STAT4Q14765 748 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 CRY2Q49AN0 593 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 WASHC2DQ5SRD0 308 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 ANO7Q6IWH7 933 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 FAM47EQ6ZV65 393 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 EGFL6Q8IUX8 553 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 RIBC1Q8N443 379 aaPredicted RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 NUDCD1Q96RS6 583 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 POP1Q99575 1024 aaKnown RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 EIF2AK1Q9BQI3 630 aaKnown RBP14.18□□□□□ -0.14
USP40-214ENST00000483519 IKZF4Q9H2S9 585 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 BCAS3Q9H6U6 928 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 NINJ2Q9NZG7 142 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 TBK1Q9UHD2 729 aa14.18□□□□□ -0.14
USP40-214ENST00000483519 FSCN2O14926 492 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 LMNAP02545 664 aaKnown RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 NPR1P16066 1061 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 ACADSP16219 412 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 PECAM1P16284 738 aaPredicted RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 TARSP26639 723 aaKnown RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 ITGA8P53708 1063 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 MXRA7P84157 204 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 LBRQ14739 615 aaKnown RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 STYK1Q6J9G0 422 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 ZNF746Q6NUN9 644 aaPredicted RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 CCDC24Q8N4L8 307 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 FAM13CQ8NE31 585 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 RPGRQ92834 1020 aaKnown RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 LENG9Q96B70 501 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 NUP85Q9BW27 656 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 NAALADL1Q9UQQ1 740 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 A0A1W2PRG0 241 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 DPPA5A6NC42 116 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 FOXO6A8MYZ6 492 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 MEIS2O14770 477 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 CLDN3O15551 220 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 EXOC3O60645 756 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 FOXN2P32314 431 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 NR1H3Q13133 447 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 GRAPQ13588 217 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 SGSM1Q2NKQ1 1148 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 FAM178BQ8IXR5 827 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 CYP4X1Q8N118 509 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 LMO3Q8TAP4 145 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 GRAPLQ8TC17 118 aaPredicted RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 ASAP3Q8TDY4 903 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 C1orf54Q8WWF1 131 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 MASTLQ96GX5 879 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 RBM17Q96I25 401 aaKnown RBP14.17□□□□□ -0.14
USP40-214ENST00000483519 CD209Q9NNX6 404 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 UVRAGQ9P2Y5 699 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 HAO1Q9UJM8 370 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 ANAPC5Q9UJX4 755 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 VAV3Q9UKW4 847 aa14.17□□□□□ -0.14
USP40-214ENST00000483519 RASA4BC9J798 803 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 MAGEB2O15479 319 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 RASA4O43374 803 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 SORBS3O60504 671 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 NPTXRO95502 500 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 INHBEP58166 350 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 KLC1Q07866 573 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 PICALMQ13492 652 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 SLC17A8Q8NDX2 589 aa14.16□□□□□ -0.14
USP40-214ENST00000483519 PAIP2Q9BPZ3 127 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms