RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PEX3P56589 373 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 XKR4Q5GH76 650 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 EEF1DP3Q658K8 133 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 MCTP1Q6DN14 999 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 LILRA6Q6PI73 481 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 C1orf186Q6ZWK4 172 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 DAW1Q8N136 415 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 SPIRE2Q8WWL2 714 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 RIN2Q8WYP3 895 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 PPP1R10Q96QC0 940 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 ACO2Q99798 780 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 MMTAG2Q9BU76 263 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 KIFC3Q9BVG8 833 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 CCDC94Q9BW85 323 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 KMT5AQ9NQR1 393 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 SLC38A7Q9NVC3 462 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 EPS15L1Q9UBC2 864 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 FBXW11Q9UKB1 542 aa13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 ZFP37Q9Y6Q3 630 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-207ENST00000481335 CCDC169A6NNP5 214 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 E9PMD0 336 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 H0YCG3 227 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 TRAPPC3O43617 180 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 HNRNPA1P09651 372 aaKnown RBP eCLIP13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 MCF2P10911 925 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 LIG1P18858 919 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PROZP22891 400 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 AVPR2P30518 371 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 SMTNP53814 917 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 MAPK7Q13164 816 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 TDGQ13569 410 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PSMD5Q16401 504 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 IL17AQ16552 155 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 ZNF568Q3ZCX4 644 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 RTP2Q5QGT7 225 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 NT5DC1Q5TFE4 455 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 KANK3Q6NY19 840 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 DCLRE1AQ6PJP8 1040 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 SYT2Q8N9I0 419 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 SMG7Q92540 1137 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 DDX27Q96GQ7 796 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 TBC1D32Q96NH3 1257 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PAAF1Q9BRP4 392 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PRKD2Q9BZL6 878 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PTPRHQ9HD43 1115 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 LIMD1Q9UGP4 676 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 DUSP12Q9UNI6 340 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 SMC3Q9UQE7 1217 aa13.32□□□□□ -0.28
SQSTM1-207ENST00000481335 PP2D1A8MPX8 630 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 ZMYND10O75800 440 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 ABCD1P33897 745 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 STRN3Q13033 797 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 LIN9Q5TKA1 542 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 FAM171A1Q5VUB5 890 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 MPZL3Q6UWV2 235 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 ALKAL1Q6UXT8 129 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 BRAPQ7Z569 592 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 LNX1Q8TBB1 728 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 ZNF707Q96C28 371 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 CDK5RAP3Q96JB5 506 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 RUSC1Q9BVN2 902 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 CDT1Q9H211 546 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 LARSQ9P2J5 1176 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 GDAQ9Y2T3 454 aa13.31□□□□□ -0.28
SQSTM1-207ENST00000481335 VWA3AA6NCI4 1184 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 TOM1L1O75674 476 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 RFPL2O75678 378 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 B3GAT3O94766 335 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 ASGR2P07307 311 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 PLS3P13797 630 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 KCNE1P15382 129 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 FGFR3P22607 806 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 CLCN5P51795 746 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 SLC12A3P55017 1021 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 UPP1Q16831 310 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 UVSSAQ2YD98 709 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 TMEM119Q4V9L6 283 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 ZPBP2Q6X784 338 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 ANKS3Q6ZW76 656 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 TAS1R3Q7RTX0 852 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 KCNK18Q7Z418 384 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 PALB2Q86YC2 1186 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 PRSS33Q8NF86 280 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 HASPINQ8TF76 798 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 B3GALT6Q96L58 329 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 SNX27Q96L92 541 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 KCNK12Q9HB15 430 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 PIDD1Q9HB75 910 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 CNTN3Q9P232 1028 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 MTRRQ9UBK8 725 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 ODF2LQ9ULJ1 636 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 BACE2Q9Y5Z0 518 aa13.3□□□□□ -0.28
SQSTM1-207ENST00000481335 DOCK6Q96HP0 2047 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 SMIM28A0A1B0GU29 152 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 ABLIM1O14639 778 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 XYLBO75191 536 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CD2BP2O95400 341 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 CDC25AP30304 524 aa13.29□□□□□ -0.28
SQSTM1-207ENST00000481335 GBP2P32456 591 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms