RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PLCB2Q00722 1185 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 SPIRE1Q08AE8 756 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 SLC14A1Q13336 389 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 PSMD5Q16401 504 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 USP39Q53GS9 565 aaKnown RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 FAM78AQ5JUQ0 283 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 VPS53Q5VIR6 699 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 ZNF746Q6NUN9 644 aaPredicted RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 PDZD4Q76G19 769 aaPredicted RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 CATSPER4Q7RTX7 472 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 TBC1D10CQ8IV04 446 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 SMAP1Q8IYB5 467 aaPredicted RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 ELMOD1Q8N336 334 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 GALNT15Q8N3T1 639 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 CCDC26Q8TAB7 109 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 MXRA8Q9BRK3 442 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 TTPALQ9BTX7 342 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 CNNM2Q9H8M5 875 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 AGPAT5Q9NUQ2 364 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 HCFC1R1Q9NWW0 138 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 MAFBQ9Y5Q3 323 aaPredicted RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.04□□□□□ -0.96
USP54-211ENST00000474929 WDR27A2RRH5 827 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 MEIS3P2A8K0S8 358 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 ZNF213O14771 459 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 MEFVO15553 781 aaPredicted RBP9.04□□□□□ -0.96
USP54-211ENST00000474929 FTH1P19P0C7X4 201 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 PXNP49023 591 aaPredicted RBP9.04□□□□□ -0.96
USP54-211ENST00000474929 CSRP3P50461 194 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 AMPD2Q01433 879 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 GRSF1Q12849 480 aaKnown RBP eCLIP9.04□□□□□ -0.96
USP54-211ENST00000474929 SLC5A9Q2M3M2 681 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 LONRF3Q496Y0 759 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 FBXO43Q4G163 708 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 ARHGAP29Q52LW3 1261 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 CYP4A22Q5TCH4 519 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 LRRC71Q8N4P6 559 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 CEP76Q8TAP6 659 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 PIP4K2CQ8TBX8 421 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 RRP36Q96EU6 259 aaKnown RBP9.04□□□□□ -0.96
USP54-211ENST00000474929 FCRL3Q96P31 734 aaPredicted RBP9.04□□□□□ -0.96
USP54-211ENST00000474929 KRT23Q9C075 422 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 PRORYQ9H606 182 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 STK24Q9Y6E0 443 aa9.04□□□□□ -0.96
USP54-211ENST00000474929 TNFRSF10BO14763 440 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 RRP8O43159 456 aaKnown RBP9.03□□□□□ -0.96
USP54-211ENST00000474929 TADA2AO75478 443 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 PSAPP07602 524 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 ITGA4P13612 1032 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 FCHO2Q0JRZ9 810 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 RAB33AQ14088 237 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 GRM4Q14833 912 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 PON2Q15165 354 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 TRIP6Q15654 476 aaKnown RBP9.03□□□□□ -0.96
USP54-211ENST00000474929 CEP55Q53EZ4 464 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 PRSS36Q5K4E3 855 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 SPDYCQ5MJ68 293 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 IQCEQ6IPM2 695 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 SWSAP1Q6NVH7 229 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 SLC23A3Q6PIS1 610 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 NIPA1Q7RTP0 329 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 GPR155Q7Z3F1 870 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 SYT12Q8IV01 421 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 PIGKQ92643 395 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 CCDC51Q96ER9 411 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 CLSTN3Q9BQT9 956 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 JPH2Q9BR39 696 aaPredicted RBP9.03□□□□□ -0.96
USP54-211ENST00000474929 GPR62Q9BZJ7 368 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 PSTPIP2Q9H939 334 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 AGO4Q9HCK5 861 aaKnown RBP9.03□□□□□ -0.96
USP54-211ENST00000474929 NRBP2Q9NSY0 501 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 DDX19BQ9UMR2 479 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 NOTCH4Q99466 2003 aa9.03□□□□□ -0.96
USP54-211ENST00000474929 TDRD15B5MCY1 1934 aaKnown RBP9.03□□□□□ -0.96
USP54-211ENST00000474929 VWA8A3KMH1 1905 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 HEPACAM2A8MVW5 462 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 PATE3B3GLJ2 98 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 B8ZZF3 427 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 IPO5O00410 1097 aaKnown RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 RLBP1P12271 317 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 ELF1P32519 619 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 DHPSP49366 369 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 GRIK3Q13003 919 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 ITGB3BPQ13352 177 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 PCBP1Q15365 356 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP54-211ENST00000474929 MCMDC2Q4G0Z9 681 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 RTP2Q5QGT7 225 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 PRSS55Q6UWB4 352 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 TOGARAM2Q6ZUX3 1019 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 LPCAT2Q7L5N7 544 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 SYT13Q7L8C5 426 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 FAM181AQ8N9Y4 354 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 ZSCAN18Q8TBC5 510 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 BAP1Q92560 729 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 SPACA7Q96KW9 195 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 TMEM209Q96SK2 561 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 SPZ1Q9BXG8 430 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 POLMQ9NP87 494 aaPredicted RBP9.02□□□□□ -0.97
USP54-211ENST00000474929 TBC1D22BQ9NU19 505 aa9.02□□□□□ -0.97
USP54-211ENST00000474929 C2orf42Q9NWW7 574 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms