RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 NR1H3Q13133 447 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 STILQ15468 1287 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SMAD1Q15797 465 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 PKDCCQ504Y2 493 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 XKR9Q5GH70 373 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CYP4A22Q5TCH4 519 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 JMJD6Q6NYC1 403 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 FAM171BQ6P995 826 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 REM2Q8IYK8 340 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 SLC38A6Q8IZM9 456 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 FAM71DQ8N9W8 422 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CPLX3Q8WVH0 158 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 GATA6Q92908 595 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 TRIM43Q96BQ3 446 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 TUBGCP3Q96CW5 907 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 FBXL18Q96ME1 805 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 NUSAP1Q9BXS6 441 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 SNX25Q9H3E2 840 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 OCEL1Q9H607 264 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 COPRSQ9NQ92 184 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 MBD1Q9UIS9 605 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 VANGL2Q9ULK5 521 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CLEC11AQ9Y240 323 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 A0A087WZG4 1122 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PNMA6FA0A0J9YX94 578 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 MEN1O00255 615 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SSBP05455 408 aaKnown RBP eCLIP3.73□□□□□ -1.81
UBR3-208ENST00000474426 CD46P15529 392 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PORP16435 677 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 CCR1P32246 355 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ATXN1P54253 815 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 DSC2Q02487 901 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 IFRD2Q12894 506 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 RALGDSQ12967 914 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 DUSP4Q13115 394 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 HNRNPDQ14103 355 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 PFKFB3Q16875 520 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZNF674Q2M3X9 581 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 DCAF8Q5TAQ9 597 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ATL3Q6DD88 541 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 TXNRD3Q86VQ6 643 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 HACE1Q8IYU2 909 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ARHGAP18Q8N392 663 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZNF321PQ8N8H1 164 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZNF397Q8NF99 534 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 TTLQ8NG68 377 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 TTLL11Q8NHH1 800 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 FERMT2Q96AC1 680 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 FAM149B1Q96BN6 582 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CAMKK2Q96RR4 588 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SMC6Q96SB8 1091 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 TSG101Q99816 390 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CEP44Q9C0F1 390 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 C12orf4Q9NQ89 552 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 TRMT13Q9NUP7 481 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 PAQR5Q9NXK6 330 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 CRNNQ9UBG3 495 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 TMCO1Q9UM00 188 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 HEY1Q9Y5J3 304 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 V9GY48 417 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 KIAA1107Q9UPP5 1409 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 MAGEB16A2A368 324 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 HEATR9A2RTY3 570 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 A8MX80 341 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 L7N2F9 121 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PSMD9O00233 223 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 APOL1O14791 398 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SPOPO43791 374 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CD2BP2O95400 341 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 SEC24BO95487 1268 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SNRPA1P09661 255 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 ALOX5P09917 674 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 RARBP10826 455 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 POLR2EP19388 210 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 TRHRP34981 398 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 GRK6P43250 576 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 AFF1P51825 1210 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 VCPP55072 806 aaKnown RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 EHHADHQ08426 723 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CYLC2Q14093 348 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 DSG2Q14126 1118 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.73□□□□□ -1.81
UBR3-208ENST00000474426 LRIT3Q3SXY7 679 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 FAM47CQ5HY64 1035 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 RTP2Q5QGT7 225 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PPP1R26Q5T8A7 1209 aaPredicted RBP3.73□□□□□ -1.81
UBR3-208ENST00000474426 PDPK2PQ6A1A2 396 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZCCHC12Q6PEW1 402 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 BORAQ6PGQ7 559 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ISLR2Q6UXK2 745 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 RFPL4BQ6ZWI9 263 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 RHOUQ7L0Q8 258 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ZBTB46Q86UZ6 589 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 PASD1Q8IV76 773 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 ITPRIPQ8IWB1 547 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 CDH26Q8IXH8 852 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 AGBL5Q8NDL9 886 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 POC1BQ8TC44 478 aa3.73□□□□□ -1.81
UBR3-208ENST00000474426 SPPL3Q8TCT6 385 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms