RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FGFR4P22455 802 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 ADCYAP1R1P41586 468 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 CXADRP78310 365 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 BMS1Q14692 1282 aaKnown RBP4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 PDCD1Q15116 288 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 Q6ZVL8 140 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 ZNF572Q7Z3I7 529 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 HDGFL2Q7Z4V5 671 aaPredicted RBP4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 LRRTM3Q86VH5 581 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 PASD1Q8IV76 773 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 FBXO18Q8NFZ0 1043 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 ZNF480Q8WV37 535 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 RSAD2Q8WXG1 361 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 ATP11BQ9Y2G3 1177 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 CD2APQ9Y5K6 639 aa4.99□□□□□ -1.61
CCDC88A-212ENST00000474059 A0A1B0GTW7 788 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 KDM1AO60341 852 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 LSP1P33241 339 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 DDB1Q16531 1140 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 TKFCQ3LXA3 575 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 SOGA3Q5TF21 947 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 TSHZ3Q63HK5 1081 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 MED25Q71SY5 747 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 BOD1Q96IK1 185 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 PHACTR3Q96KR7 559 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 KIAA1586Q9HCI6 787 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 ARPP21Q9UBL0 812 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 EDARQ9UNE0 448 aa4.98□□□□□ -1.61
CCDC88A-212ENST00000474059 PROB1E7EW31 1015 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 LSSP48449 732 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 NEK4P51957 841 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 LGALS4P56470 323 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 CT83Q5H943 113 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 FRMD7Q6ZUT3 714 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 Q8N9P0 234 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 FUBP3Q96I24 572 aaKnown RBP eCLIP4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 DNAJC2Q99543 621 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 IL17RBQ9NRM6 502 aa4.97□□□□□ -1.61
CCDC88A-212ENST00000474059 AATKQ6ZMQ8 1374 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 PROP1O75360 226 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 GCSHP23434 173 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 SLC6A2P23975 617 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 ABCG1P45844 678 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 CYP2A13Q16696 494 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 BROXQ5VW32 411 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 ZNF788Q6ZQV5 615 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 HOXB13Q92826 284 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 TARS2Q9BW92 718 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 UNKLQ9H9P5 680 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 EMC7Q9NPA0 242 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 USP25Q9UHP3 1055 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 SETD1BQ9UPS6 1966 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 RPTORQ8N122 1335 aa4.96□□□□□ -1.62
CCDC88A-212ENST00000474059 E9PSI1 815 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 RAP2BP61225 183 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 KRTAP5-11Q6L8G4 156 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 PDZD4Q76G19 769 aaPredicted RBP4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 ACTRT2Q8TDY3 377 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 SMG7Q92540 1137 aaKnown RBP4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 DPF1Q92782 380 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 RNF31Q96EP0 1072 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 KRTAP1-5Q9BYS1 174 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 FBXO34Q9NWN3 711 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 KCTD5Q9NXV2 234 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 SLC23A1Q9UHI7 598 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 SCOCQ9UIL1 159 aa4.95□□□□□ -1.62
CCDC88A-212ENST00000474059 FKBP9O95302 570 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 SNRPA1P09661 255 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 SREBF1P36956 1147 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 ZNF81P51508 661 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 HSD11B2P80365 405 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 MRPS35P82673 323 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 FKBP9P1Q75LS8 142 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 LNX2Q8N448 690 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 Q8NA96 180 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 OR7D4Q8NG98 312 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 TSPEARQ8WU66 669 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 EAF2Q96CJ1 260 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 AIFM2Q9BRQ8 373 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 GALNT9Q9HCQ5 603 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 ASB6Q9NWX5 421 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 HSFX1Q9UBD0 423 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 KCNE5Q9UJ90 142 aa4.94□□□□□ -1.62
CCDC88A-212ENST00000474059 ELFN1P0C7U0 828 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 ADSLP30566 484 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 GUCY1A2P33402 732 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 PTPN7P35236 360 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 VAV2P52735 878 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 AFMIDQ63HM1 303 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 KIAA0895LQ68EN5 471 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 CNNM4Q6P4Q7 775 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 RIN2Q8WYP3 895 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 SLC5A5Q92911 643 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 NINJ1Q92982 152 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 MRI1Q9BV20 369 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 CASS4Q9NQ75 786 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 TOPORSQ9NS56 1045 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 TBCCD1Q9NVR7 557 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 FAM30AQ9NZY2 134 aa4.93□□□□□ -1.62
CCDC88A-212ENST00000474059 SLC17A6Q9P2U8 582 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms