RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PLXDC1	Q8IUK5	500 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	CCAR1	Q8IX12	1150 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	CCDC146	Q8IYE0	955 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	KLHDC4	Q8TBB5	520 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	TIFA	Q96CG3	184 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	CEP95	Q96GE4	821 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	TMX3	Q96JJ7	454 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	MPHOSPH9	Q99550	1183 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	SSBP3	Q9BWW4	388 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLA2G12B	Q9BX93	195 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PPP4R1L	Q9P1A2	415 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	NCDN	Q9UBB6	729 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	L1RE1	Q9UN81	338 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	NR2E3	Q9Y5X4	410 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC30A1	Q9Y6M5	507 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044		B5MCH6	92 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	NT5C1B-RDH14	C9J2C7	533 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	TPP1	O14773	563 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	PHKG2	P15735	406 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	RHCE	P18577	417 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	MAL	P21145	153 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	FPR1	P21462	350 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	RHD	Q02161	417 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	SNAPC2	Q13487	334 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	GRM7	Q14831	915 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	METTL24	Q5JXM2	366 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	DACT2	Q5SW24	774 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	NPNT	Q6UXI9	565 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	SEM1	Q6ZVN7	128 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	GPRIN1	Q7Z2K8	1008 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZNF512	Q96ME7	567 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	TEPSIN	Q96N21	525 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	LRRC37B	Q96QE4	947 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	VRK1	Q99986	396 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	LDAH	Q9H6V9	325 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	PARD6A	Q9NPB6	346 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC52A1	Q9NWF4	448 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	SIDT1	Q9NXL6	827 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLA2G3	Q9NZ20	509 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	ACTL7A	Q9Y615	435 aa		4.88	□□□□□ -1.63
PTCD3-209	ENST00000472044	TBKBP1	A7MCY6	615 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	CXorf49	A8MYA2	514 aa	Predicted RBP	4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	RAD17	O75943	681 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	STC2	O76061	302 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	SNRPA1	P09661	255 aa	Known RBP	4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	TYR	P14679	529 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ALDH1A3	P47895	512 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZNF280A	P59817	542 aa	Predicted RBP	4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	GPSM2	P81274	684 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ATP2B3	Q16720	1220 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	MAP9	Q49MG5	647 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	FKBP15	Q5T1M5	1219 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	AFMID	Q63HM1	303 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	GADL1	Q6ZQY3	521 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	HEATR3	Q7Z4Q2	680 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	DAAM2	Q86T65	1068 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	DCBLD1	Q8N8Z6	715 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	PJA1	Q8NG27	643 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLBD2	Q8NHP8	589 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	STON2	Q8WXE9	905 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	RAB24	Q969Q5	203 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ARL8A	Q96BM9	186 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	B3GNT5	Q9BYG0	378 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZNF700	Q9H0M5	742 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZCCHC4	Q9H5U6	513 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	WDCP	Q9H6R7	721 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	LMBRD1	Q9NUN5	540 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	PNPO	Q9NVS9	261 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	HECA	Q9UBI9	543 aa	Predicted RBP	4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	PCDHA3	Q9Y5H8	950 aa		4.87	□□□□□ -1.63
PTCD3-209	ENST00000472044	NPEPPSL1	A6NEC2	478 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	CAPN8	A6NHC0	703 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	LRRC14B	A6NHZ5	514 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	MYB	P10242	640 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	CACNB3	P54284	484 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	CLRN1	P58418	232 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	RAB1A	P62820	205 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM193A	P78312	1265 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	FOXL1	Q12952	345 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	SAFB	Q15424	915 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	BMT2	Q1RMZ1	405 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	PABPC1L	Q4VXU2	614 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	UBXN11	Q5T124	520 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	TCTN3	Q6NUS6	607 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	MAEA	Q7L5Y9	396 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM83A	Q86UY5	434 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	GIMAP8	Q8ND71	665 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM156A	Q8NDB6	213 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	IL17RD	Q8NFM7	739 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	GNRHR2	Q96P88	292 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	RBM15	Q96T37	977 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	MRI1	Q9BV20	369 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	LSM14B	Q9BX40	385 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC23A1	Q9UHI7	598 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	CLCA2	Q9UQC9	943 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZNF536	O15090	1300 aa		4.86	□□□□□ -1.63
PTCD3-209	ENST00000472044	ANO9	A1A5B4	782 aa		4.85	□□□□□ -1.63
PTCD3-209	ENST00000472044	F2RL2	O00254	374 aa		4.85	□□□□□ -1.63

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