RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 XXYLT1Q8NBI6 393 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 RDH13Q8NBN7 331 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 GOLGA5Q8TBA6 731 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 TMEM174Q8WUU8 243 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 ZMAT2Q96NC0 199 aaKnown RBP16.1■□□□□ 0.17
COL9A3-209ENST00000469852 ZBED2Q9BTP6 218 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 DNAJC25Q9H1X3 360 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 YBX2Q9Y2T7 364 aaKnown RBP16.1■□□□□ 0.17
COL9A3-209ENST00000469852 GIT1Q9Y2X7 761 aa16.1■□□□□ 0.17
COL9A3-209ENST00000469852 CHD9Q3L8U1 2897 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 TTC26A0AVF1 554 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 LACTBL1A8MY62 500 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 INPPL1O15357 1258 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 TLL1O43897 1013 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 EXOC3O60645 756 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 AKAP3O75969 853 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 POMCP01189 267 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 LRRC63Q05C16 580 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 ADAM9Q13443 819 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 SNRNP35Q16560 246 aaKnown RBP16.09■□□□□ 0.17
COL9A3-209ENST00000469852 XKR4Q5GH76 650 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 NOMO2Q5JPE7 1267 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 GLB1LQ6UWU2 654 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 SPRED2Q7Z698 418 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 BRSK2Q8IWQ3 736 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 HACE1Q8IYU2 909 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 PLEKHO2Q8TD55 490 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 YME1L1Q96TA2 773 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 PBX4Q9BYU1 374 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 TMEM117Q9H0C3 514 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 RPF1Q9H9Y2 349 aaKnown RBP16.09■□□□□ 0.17
COL9A3-209ENST00000469852 ANO10Q9NW15 660 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 RWDD2AQ9UIY3 292 aa16.09■□□□□ 0.17
COL9A3-209ENST00000469852 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 KIAA0391O15091 583 aaKnown RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 LETM1O95202 739 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 LDHAP00338 332 aaKnown RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 LINC00271P0C7V0 271 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 YARSP54577 528 aaKnown RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 NAB2Q15742 525 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 ANO6Q4KMQ2 910 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 CEP135Q66GS9 1140 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 ZNF280BQ86YH2 543 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 SP7Q8TDD2 431 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 FAM212AQ96EL1 285 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 RAD9AQ99638 391 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 TSG101Q99816 390 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 PDE11AQ9HCR9 933 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 UBN1Q9NPG3 1134 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 TBC1D13Q9NVG8 400 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 RBAKQ9NYW8 714 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 CNTN3Q9P232 1028 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 CACNG4Q9UBN1 327 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 STXBP5LQ9Y2K9 1186 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 MRPL42Q9Y6G3 142 aaKnown RBP16.08■□□□□ 0.16
COL9A3-209ENST00000469852 A0A0C4DFX4 3053 aa16.08■□□□□ 0.16
COL9A3-209ENST00000469852 SMIM28A0A1B0GU29 152 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 BICDL2A1A5D9 508 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 HOXA2O43364 376 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 DDHD2O94830 711 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 NFICP08651 508 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 SOX4Q06945 474 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 CYP24A1Q07973 514 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 MYBPC2Q14324 1141 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 KYAT1Q16773 422 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 LMBRD2Q68DH5 695 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 EFCAB13Q8IY85 973 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 ABI1Q8IZP0 508 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 C18orf25Q96B23 403 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 PPP1R10Q96QC0 940 aaKnown RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 CWH43Q9H720 699 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 TOPORSQ9NS56 1045 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 RNF216Q9NWF9 866 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-209ENST00000469852 INSL6Q9Y581 213 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 PTPRJQ12913 1337 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 NLRC5Q86WI3 1866 aa16.07■□□□□ 0.16
COL9A3-209ENST00000469852 LINC01553A4QN01 128 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 ZNF233A6NK53 670 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 TULP1O00294 542 aaPredicted RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 CA3P07451 260 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 CCDC192P0DO97 292 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 KCNE1P15382 129 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 ERCC5P28715 1186 aaPredicted RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 PBX3P40426 434 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 GUCY2FP51841 1108 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 FKBP3Q00688 224 aaKnown RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 PPP2R3AQ06190 1150 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 BTG3Q14201 252 aaPredicted RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 SCARA3Q6AZY7 606 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 JADE1Q6IE81 842 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 FOXR2Q6PJQ5 311 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 CMTR2Q8IYT2 770 aaKnown RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 MFSD14AQ96MC6 490 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 RPS6KC1Q96S38 1066 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 POP1Q99575 1024 aaKnown RBP16.06■□□□□ 0.16
COL9A3-209ENST00000469852 NKX2-4Q9H2Z4 354 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 GOLGA2P5Q9HBQ8 144 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 KIAA1586Q9HCI6 787 aa16.06■□□□□ 0.16
COL9A3-209ENST00000469852 DNAJB4Q9UDY4 337 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms