RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NT5C3AQ9H0P0 336 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 DDX19AQ9NUU7 478 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 GMEB2Q9UKD1 530 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 KIAA1024Q9UPX6 916 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 PKD1L2Q7Z442 2459 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 ASPMQ8IZT6 3477 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 DOCK6Q96HP0 2047 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 A0A087WWV3 80 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 ASAP2O43150 1006 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 CSDE1O75534 798 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 SKIP12755 728 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 LAMP2P13473 410 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 SFPQP23246 707 aaKnown RBP eCLIP13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 ZNF598Q86UK7 904 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 KCTD17Q8N5Z5 321 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 TCP11Q8WWU5 503 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 RSPH1Q8WYR4 309 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 CLIC6Q96NY7 704 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 PNMA5Q96PV4 448 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 DDX23Q9BUQ8 820 aaKnown RBP13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 OSBPL6Q9BZF3 934 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 COL4A3BPQ9Y5P4 624 aa13.15□□□□□ -0.3
SQSTM1-206ENST00000466342 CLUHO75153 1309 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 ANHXE9PGG2 379 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 CUTAO60888 179 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 ZC3H11AO75152 810 aaKnown RBP eCLIP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 DGAT1O75907 488 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 CNPP09543 421 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 NCLP19338 710 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 FGFR4P22455 802 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 MAGEA9P43362 315 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 EMC2Q15006 297 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 ZRSR1Q15695 479 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 TMEM119Q4V9L6 283 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 SRGAP1Q7Z6B7 1085 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 KSR1Q8IVT5 923 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 PRPF31Q8WWY3 499 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 PSPC1Q8WXF1 523 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 CALML4Q96GE6 196 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 EPSTI1Q96J88 318 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 CDK5RAP3Q96JB5 506 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 NLRP4Q96MN2 994 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 MTRQ99707 1265 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 IFT122Q9HBG6 1241 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 BMP2KQ9NSY1 1161 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 RCOR1Q9UKL0 485 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 FRYQ5TBA9 3013 aa13.14□□□□□ -0.31
SQSTM1-206ENST00000466342 FASNP49327 2511 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 ARHGEF35A5YM69 484 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 E9PMD0 336 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 USO1O60763 962 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 LILRB3O75022 631 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 ZNF623O75123 536 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 GALTP07902 379 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 TXLNAP40222 546 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 SHC2P98077 582 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 PRKCQQ04759 706 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 SPEM2Q0P670 501 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 SNW1Q13573 536 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 HTR4Q13639 388 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 KARSQ15046 597 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 USP49Q70CQ1 688 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 CATSPER4Q7RTX7 472 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 KCNK18Q7Z418 384 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 BCL7CQ8WUZ0 217 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 LEO1Q8WVC0 666 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 SPATA32Q96LK8 384 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 BHMT2Q9H2M3 363 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 XPNPEP1Q9NQW7 623 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 MAN1C1Q9NR34 630 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 CHMP5Q9NZZ3 219 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 STK39Q9UEW8 545 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 CCDC39Q9UFE4 941 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 DPP7Q9UHL4 492 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 DNM3Q9UQ16 869 aa13.13□□□□□ -0.31
SQSTM1-206ENST00000466342 COL4A3Q01955 1670 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 FAM170BA6NMN3 283 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 INPPL1O15357 1258 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PLCG1P19174 1290 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PMLP29590 882 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PHKA2P46019 1235 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 ME1P48163 572 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 RAB27AP51159 221 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 GPC5P78333 572 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 POU5F1BQ06416 359 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 LAMTOR4Q0VGL1 99 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 MXD4Q14582 209 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 UBXN2BQ14CS0 331 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PCBP1Q15365 356 aaKnown RBP eCLIP13.12□□□□□ -0.313e-8■■■□□ 18.8
SQSTM1-206ENST00000466342 AXDND1Q5T1B0 1012 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 TWF2Q6IBS0 349 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 ELMSAN1Q6PJG2 1045 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 PADI6Q6TGC4 694 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 RASSF8Q8NHQ8 419 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 DDX1Q92499 740 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 TMEM143Q96AN5 459 aa13.12□□□□□ -0.31
SQSTM1-206ENST00000466342 IPO9Q96P70 1041 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms