RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 CACNA1GO43497 2377 aa16.07■□□□□ 0.16
CXCR4-203ENST00000466288 B4GALT5O43286 388 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 KIF4AO95239 1232 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 UVSSAQ2YD98 709 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 LAIR1Q6GTX8 287 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 OTUD6AQ7L8S5 288 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 CDR2LQ86X02 465 aaPredicted RBP16.06■□□□□ 0.16
CXCR4-203ENST00000466288 CEP57Q86XR8 500 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 BLIDQ8IZY5 108 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 FBXL16Q8N461 479 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 CELF5Q8N6W0 485 aaKnown RBP16.06■□□□□ 0.16
CXCR4-203ENST00000466288 ING5Q8WYH8 240 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 CHAMP1Q96JM3 812 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 FAM20AQ96MK3 541 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 CHRDQ9H2X0 955 aa16.06■□□□□ 0.16
CXCR4-203ENST00000466288 MRPS17Q9Y2R5 130 aaKnown RBP16.06■□□□□ 0.16
CXCR4-203ENST00000466288 A0A1B0GUA9 196 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.05■□□□□ 0.16
CXCR4-203ENST00000466288 CASTOR2A6NHX0 329 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 NPTXRO95502 500 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 NRLP54845 237 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 TUSC3Q13454 348 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 CAPSQ13938 189 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 RAB33AQ14088 237 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 EPHA7Q15375 998 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 XKR9Q5GH70 373 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 TANGO2Q6ICL3 276 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 SLC27A1Q6PCB7 646 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 ASAP3Q8TDY4 903 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 MCRS1Q96EZ8 462 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 NFKBIZQ9BYH8 718 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 AGXT2Q9BYV1 514 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 SLKQ9H2G2 1235 aaPredicted RBP16.05■□□□□ 0.16
CXCR4-203ENST00000466288 NCOA5Q9HCD5 579 aaKnown RBP16.05■□□□□ 0.16
CXCR4-203ENST00000466288 GDE1Q9NZC3 331 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 RGL1Q9NZL6 768 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 PARP2Q9UGN5 583 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 RAB23Q9ULC3 237 aa16.05■□□□□ 0.16
CXCR4-203ENST00000466288 MRPS23Q9Y3D9 190 aaKnown RBP16.05■□□□□ 0.16
CXCR4-203ENST00000466288 LRP3O75074 770 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 RETP07949 1114 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 TFDP1Q14186 410 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 INF2Q27J81 1249 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 SLC5A9Q2M3M2 681 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 DAGLBQ8NCG7 672 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 DNASE1L2Q92874 299 aa16.04■□□□□ 0.16
CXCR4-203ENST00000466288 NDRG2Q9UN36 371 aaKnown RBP16.04■□□□□ 0.16
CXCR4-203ENST00000466288 PTGESO14684 152 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 PDIA3P30101 505 aaKnown RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 OR1D2P34982 312 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 ARL2P36404 184 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 PDXDC1Q6P996 788 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 RTL10Q7L3V2 364 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 HAS1Q92839 578 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 KCNB2Q92953 911 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 ELSPBP1Q96BH3 223 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 DYDC2Q96IM9 177 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 ZSWIM4Q9H7M6 989 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 AVENQ9NQS1 362 aaPredicted RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 SEMA4GQ9NTN9 838 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 SPEGQ15772 3267 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 NOTCH4Q99466 2003 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 RHOP08100 348 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 GLRA2P23416 452 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 FCARP24071 287 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 CCT2P78371 535 aaKnown RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 CTTNQ14247 550 aaKnown RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 NAB2Q15742 525 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 PPP4R3AQ6IN85 833 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 JAKMIP1Q96N16 626 aaKnown RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 IER2Q9BTL4 223 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 CXCL16Q9H2A7 254 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 MTRRQ9UBK8 725 aa16.03■□□□□ 0.16
CXCR4-203ENST00000466288 TDRD15B5MCY1 1934 aaKnown RBP16.03■□□□□ 0.16
CXCR4-203ENST00000466288 MAN2B1O00754 1011 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 NRG2O14511 850 aaPredicted RBP16.02■□□□□ 0.15
CXCR4-203ENST00000466288 GDF9O60383 454 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 CEBPBP17676 345 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 EVCP57679 992 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 CYP4A11Q02928 519 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 SPIRE1Q08AE8 756 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 ELAVL2Q12926 359 aaKnown RBP16.02■□□□□ 0.15
CXCR4-203ENST00000466288 CSRP2Q16527 193 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 BLOC1S2Q6QNY1 142 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 PRR23CQ6ZRP0 262 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 PRR23BQ6ZRT6 265 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 RALYQ9UKM9 306 aaKnown RBP16.02■□□□□ 0.15
CXCR4-203ENST00000466288 ZZEF1O43149 2961 aa16.02■□□□□ 0.15
CXCR4-203ENST00000466288 SLITRK3O94933 977 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 THP07101 528 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 FGFR3P22607 806 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 IGFBP6P24592 240 aaPredicted RBP16.01■□□□□ 0.15
CXCR4-203ENST00000466288 CCR3P51677 355 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 GRM2Q14416 872 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 PPP2R5DQ14738 602 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 NCAPH2Q6IBW4 605 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 GALNT17Q6IS24 598 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.01■□□□□ 0.15
CXCR4-203ENST00000466288 KRT25Q7Z3Z0 450 aa16.01■□□□□ 0.15
CXCR4-203ENST00000466288 TRIM22Q8IYM9 498 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms