RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ARHGAP6O43182 974 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 GPR32O75388 356 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 MAFO75444 373 aaPredicted RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 RPS6KA5O75582 802 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 PRPF6O94906 941 aaKnown RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 NR3C1P04150 777 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 MYBP10242 640 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 SKILP12757 684 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 NR2F2P24468 414 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 ARL2P36404 184 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 BMPR1AP36894 532 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 CCZ1BP86790 482 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 CCZ1P86791 482 aaPredicted RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 CACNB1Q02641 598 aaPredicted RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 RAD51AP2Q09MP3 1159 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 PTPROQ16827 1216 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 HAUS6Q7Z4H7 955 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 FAM228AQ86W67 206 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 METTL13Q8N6R0 699 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 LINC01465Q8N7H1 131 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 TC2NQ8N9U0 490 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 GLIS3Q8NEA6 775 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 TCP11Q8WWU5 503 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 SLC7A3Q8WY07 619 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 BORCS6Q96GS4 357 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 ZNF668Q96K58 619 aaPredicted RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 FGFBP2Q9BYJ0 223 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 NUCKS1Q9H1E3 243 aaKnown RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 VPS16Q9H269 839 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 TMEM134Q9H6X4 195 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 TBC1D7Q9P0N9 293 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 HCSTQ9UBK5 93 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 FBXL5Q9UKA1 691 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 CAPN11Q9UMQ6 739 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 USO1O60763 962 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 EPB41P11171 864 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 NMT1P30419 496 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 PSMC2P35998 433 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 NAMPTP43490 491 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 NPEPPSP55786 919 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 CDK17Q00537 523 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 MXD4Q14582 209 aaPredicted RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 MAP4K3Q8IVH8 894 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 CMTR2Q8IYT2 770 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 TMEM161BQ8NDZ6 487 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 ADAM2Q99965 735 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 C11orf84Q9BUA3 381 aaPredicted RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 NSUN3Q9H649 340 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 ALG13Q9NP73 1137 aaKnown RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 XPNPEP1Q9NQW7 623 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 TAB2Q9NYJ8 693 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 ARHGAP28Q9P2N2 729 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 ARMCX3Q9UH62 379 aaPredicted RBP12.83□□□□□ -0.36
USP54-209ENST00000464635 ST3GAL5Q9UNP4 418 aa12.83□□□□□ -0.36
USP54-209ENST00000464635 SFI1A8K8P3 1242 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 C9IYK1 514 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 H3BQ06 376 aaPredicted RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 P4HA2O15460 535 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 MAGEB2O15479 319 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 MFAP3LO75121 409 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 PIGRP01833 764 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 RB1P06400 928 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 IL9P15248 144 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 GARTP22102 1010 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 HNRNPH3P31942 346 aaKnown RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 NPTX2P47972 431 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 CRYBB1P53674 252 aaPredicted RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 POLGP54098 1239 aaPredicted RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 NLRP11P59045 1033 aaKnown RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 DRP2Q13474 957 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 CAMK1Q14012 370 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 NOLC1Q14978 699 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP54-209ENST00000464635 LEXMQ3ZCV2 418 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 CCDC40Q4G0X9 1142 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 HSP90AA4PQ58FG1 418 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 EFCAB12Q6NXP0 572 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 TMTC1Q8IUR5 882 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 NELFCDQ8IXH7 590 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 ZNF710Q8N1W2 664 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 ZNF397Q8NF99 534 aaPredicted RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 KHSRPQ92945 711 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP54-209ENST00000464635 SH2D3AQ9BRG2 576 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 NFKBIZQ9BYH8 718 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 TTYH3Q9C0H2 523 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 ADAMTS10Q9H324 1103 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 KIAA1586Q9HCI6 787 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 CD320Q9NPF0 282 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 PLCB1Q9NQ66 1216 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 KMT5AQ9NQR1 393 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 AGPAT3Q9NRZ7 376 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 SEPT9Q9UHD8 586 aaPredicted RBP12.82□□□□□ -0.36
USP54-209ENST00000464635 LRFN2Q9ULH4 789 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 MYO6Q9UM54 1294 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 TBX20Q9UMR3 447 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 AKT3Q9Y243 479 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 FRMD4BQ9Y2L6 1034 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 RWDD3Q9Y3V2 267 aa12.82□□□□□ -0.36
USP54-209ENST00000464635 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP54-209ENST00000464635 STYXL1Q9Y6J8 313 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms