RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 LNX1Q8TBB1 728 aaPredicted RBP16.21■□□□□ 0.19
SMPD4-216ENST00000461187 PIK3R5Q8WYR1 880 aa16.21■□□□□ 0.19
SMPD4-216ENST00000461187 NXPE3Q969Y0 559 aa16.21■□□□□ 0.19
SMPD4-216ENST00000461187 KIFC3Q9BVG8 833 aa16.21■□□□□ 0.19
SMPD4-216ENST00000461187 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.21■□□□□ 0.19
SMPD4-216ENST00000461187 WNT16Q9UBV4 365 aa16.21■□□□□ 0.19
SMPD4-216ENST00000461187 PATJQ8NI35 1801 aa16.21■□□□□ 0.19
SMPD4-216ENST00000461187 KRBA1A5PL33 1030 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 CFHP08603 1231 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 LAMP2P13473 410 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 CCT6AP40227 531 aaKnown RBP16.2■□□□□ 0.18
SMPD4-216ENST00000461187 TRAPPC10P48553 1259 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 RBM25P49756 843 aaKnown RBP16.2■□□□□ 0.18
SMPD4-216ENST00000461187 NBR1Q14596 966 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 PSMD5Q16401 504 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 NT5DC1Q5TFE4 455 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 GET4Q7L5D6 327 aaPredicted RBP16.2■□□□□ 0.18
SMPD4-216ENST00000461187 ASCL5Q7RTU5 278 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 CEP57Q86XR8 500 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 RTP3Q9BQQ7 232 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 BHMT2Q9H2M3 363 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 GDAQ9Y2T3 454 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 GVINP1Q7Z2Y8 2422 aa16.2■□□□□ 0.18
SMPD4-216ENST00000461187 EP300Q09472 2414 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-216ENST00000461187 ANHXE9PGG2 379 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 ADAM12O43184 909 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 SRFP11831 508 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 IGFBP6P24592 240 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-216ENST00000461187 EFNA5P52803 228 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 HMGN5P82970 282 aaKnown RBP16.19■□□□□ 0.18
SMPD4-216ENST00000461187 ELAVL2Q12926 359 aaKnown RBP16.19■□□□□ 0.18
SMPD4-216ENST00000461187 DCAF4L1Q3SXM0 396 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 CCDC105Q8IYK2 499 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 KIFAP3Q92845 792 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 IFT74Q96LB3 600 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 ZSCAN31Q96LW9 406 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-216ENST00000461187 LRWD1Q9UFC0 647 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 KIAA1024Q9UPX6 916 aa16.19■□□□□ 0.18
SMPD4-216ENST00000461187 PRR23AA6NEV1 266 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 TOB1P50616 345 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 HTR4Q13639 388 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 GNL2Q13823 731 aaKnown RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 PDIA5Q14554 519 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 ATF7IP2Q5U623 682 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 CD300LGQ6UXG3 332 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 GRASPQ7Z6J2 395 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 IGSF22Q8N9C0 903 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 FAM184AQ8NB25 1140 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 DTWD2Q8NBA8 298 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 PPP1R10Q96QC0 940 aaKnown RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 KIF2CQ99661 725 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 DDX19AQ9NUU7 478 aaKnown RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 DAXXQ9UER7 740 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 CA14Q9ULX7 337 aa16.18■□□□□ 0.18
SMPD4-216ENST00000461187 NOL7Q9UMY1 257 aaKnown RBP16.18■□□□□ 0.18
SMPD4-216ENST00000461187 TMEM189-UBE2V1I3L0A0 370 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 K7ERI5 159 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 C8AP07357 584 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 HNRNPA1P09651 372 aaKnown RBP eCLIP16.17■□□□□ 0.18
SMPD4-216ENST00000461187 FGFR3P22607 806 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 FSHRP23945 695 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 U2AF2P26368 475 aaKnown RBP eCLIP16.17■□□□□ 0.18
SMPD4-216ENST00000461187 NTHL1P78549 312 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 PTGDRQ13258 359 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 GLRA4Q5JXX5 417 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 PPM1LQ5SGD2 360 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 LIN9Q5TKA1 542 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 PDXDC1Q6P996 788 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.17■□□□□ 0.18
SMPD4-216ENST00000461187 FRMD5Q7Z6J6 570 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 GPR152Q8TDT2 470 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 SH2B1Q9NRF2 756 aaPredicted RBP16.17■□□□□ 0.18
SMPD4-216ENST00000461187 PCDHB6Q9Y5E3 794 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 ZFP37Q9Y6Q3 630 aaPredicted RBP16.17■□□□□ 0.18
SMPD4-216ENST00000461187 COL4A3Q01955 1670 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 ZNF292O60281 2723 aa16.17■□□□□ 0.18
SMPD4-216ENST00000461187 DCHS1Q96JQ0 3298 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 TCHHQ07283 1943 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 STK25O00506 426 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 B3GAT3O94766 335 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 HOXA9P31269 272 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 CLCNKBP51801 687 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 RAB33AQ14088 237 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 ANGPT1Q15389 498 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 UPP1Q16831 310 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 DCLRE1AQ6PJP8 1040 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 DAW1Q8N136 415 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 ST13P5Q8NFI4 369 aaPredicted RBP16.16■□□□□ 0.18
SMPD4-216ENST00000461187 SNX29Q8TEQ0 813 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 ACO2Q99798 780 aaKnown RBP16.16■□□□□ 0.18
SMPD4-216ENST00000461187 RPP25Q9BUL9 199 aaKnown RBP16.16■□□□□ 0.18
SMPD4-216ENST00000461187 TBC1D17Q9HA65 648 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 GOLGA2P5Q9HBQ8 144 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 SLC2A4RGQ9NR83 387 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 MTRRQ9UBK8 725 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 TNFSF13BQ9Y275 285 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 STK24Q9Y6E0 443 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 NUMBLQ9Y6R0 609 aa16.16■□□□□ 0.18
SMPD4-216ENST00000461187 F5P12259 2224 aa16.15■□□□□ 0.18
SMPD4-216ENST00000461187 SMIM28A0A1B0GU29 152 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms