RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CHN1P15882 459 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 EIF2AK2P19525 551 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MARK3P27448 753 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CLK2P49760 499 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 ROR2Q01974 943 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 SGO2Q562F6 1265 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 ODR4Q5SWX8 454 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CDKAL1Q5VV42 579 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 PAPD7Q5XG87 772 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 BZW1Q7L1Q6 419 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 NCAPG2Q86XI2 1143 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 RSAD2Q8WXG1 361 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 WDR18Q9BV38 432 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRAIPQ9BWF2 469 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MAF1Q9H063 256 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MTIF3Q9H2K0 278 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TTC26A0AVF1 554 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 POTEFA5A3E0 1075 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 IGF2BP3O00425 579 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MEIS2O14770 477 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MSH4O15457 936 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 STAM2O75886 525 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 APOEP02649 317 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 PSAPP07602 524 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 POTEIP0CG38 1075 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CA4P22748 312 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 NR2F2P24468 414 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TMED10P49755 219 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 DNAL1Q4LDG9 190 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 XKR9Q5GH70 373 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 C1orf146Q5VVC0 180 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 POTEGQ6S5H5 508 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 POTEEQ6S8J3 1075 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 RAET1EQ8TD07 263 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 OPTNQ96CV9 577 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 AP1M1Q9BXS5 423 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 IFT122Q9HBG6 1241 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 KCNMB3Q9NPA1 279 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 KCNH4Q9UQ05 1017 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 KIAA1551Q9HCM1 1747 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 IQANK1A0A1B0GTG1 560 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRIM49BA6NDI0 452 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRPA1O75762 1119 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CELF2O95319 508 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MT-ND3P03897 115 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 STAT3P40763 770 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 HMGCS2P54868 508 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 NOP14P78316 857 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CTTNQ14247 550 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TAF12Q16514 161 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MIS18BP1Q6P0N0 1132 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRMT10CQ7L0Y3 403 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 RDM1Q8NG50 284 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRAPPC9Q96Q05 1148 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 KIFC3Q9BVG8 833 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MLXIPQ9HAP2 919 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TMBIM4Q9HC24 238 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 A0A1W2PQJ5 194 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 WNT7AO00755 349 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 ASAP2O43150 1006 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 MAN1A2O60476 641 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 EXOC3O60645 756 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 FGGP02679 453 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 BRAFP15056 766 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 SERPINB3P29508 390 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 GARSP41250 739 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 QARSP47897 775 aaKnown RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 STK4Q13043 487 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 LRRC41Q15345 812 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 COBLL1Q53SF7 1204 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 NBPF12Q5TAG4 269 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 ANKRD40Q6AI12 368 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 TRIM65Q6PJ69 517 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 SESTD1Q86VW0 696 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 LONP2Q86WA8 852 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 EXOC8Q8IYI6 725 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CXorf38Q8TB03 319 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 FAM81BQ96LP2 452 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 GPRC5DQ9NZD1 345 aa6.58□□□□□ -1.36
VPS13D-202ENST00000460333 CORO1CQ9ULV4 474 aaPredicted RBP6.58□□□□□ -1.36
VPS13D-202ENST00000460333 LRRC37AA6NMS7 1700 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SSU72P8A0A1W2PR75 194 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PHF20L1A8MW92 1017 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PPP1R11O60927 126 aaPredicted RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PYGBP11216 843 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 FCER1AP12319 257 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CD44P16070 742 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 VCAM1P19320 739 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 PSMC2P35998 433 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 KNOP1Q1ED39 458 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SLC35G1Q2M3R5 365 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 EDRF1Q3B7T1 1238 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CHST13Q8NET6 341 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ZC3H15Q8WU90 426 aaKnown RBP6.57□□□□□ -1.36
VPS13D-202ENST00000460333 SDCCAG3Q96C92 435 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 AGBL1Q96MI9 1066 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 ACCSQ96QU6 501 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 CARD9Q9H257 536 aa6.57□□□□□ -1.36
VPS13D-202ENST00000460333 C10orf88Q9H8K7 445 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms