RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 HPS3Q969F9 1004 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 CCDC34Q96HJ3 373 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 IGSF21Q96ID5 467 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 ACAP3Q96P50 834 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 TSPAN18Q96SJ8 248 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 PLEKHA5Q9HAU0 1116 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 STK39Q9UEW8 545 aa15.68■□□□□ 0.1
COL3A1-203ENST00000450867 SMIM28A0A1B0GU29 152 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 TTC26A0AVF1 554 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 TISP43B9A030 160 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 NRP1O14786 923 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 FSCN2O14926 492 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 RHOBTB3O94955 611 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 PRR29P0C7W0 189 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 GARTP22102 1010 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 IGFBP4P22692 258 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 COL19A1Q14993 1142 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 SLC10A6Q3KNW5 377 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 PDE12Q6L8Q7 609 aaKnown RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 TMEM173Q86WV6 379 aaPredicted RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 RNF168Q8IYW5 571 aaPredicted RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 SPATA20Q8TB22 786 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 BCL7CQ8WUZ0 217 aaPredicted RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 SCFD1Q8WVM8 642 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 FAM193BQ96PV7 902 aaPredicted RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 MSTO1Q9BUK6 570 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 GBP3Q9H0R5 595 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 IKZF4Q9H2S9 585 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 MARCH5Q9NX47 278 aa15.67■□□□□ 0.1
COL3A1-203ENST00000450867 CPSF3Q9UKF6 684 aaKnown RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.67■□□□□ 0.1
COL3A1-203ENST00000450867 KIAA0391O15091 583 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 GADD45BO75293 160 aaPredicted RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 PRPF6O94906 941 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 RPN1P04843 607 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 ALDH2P05091 517 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 HARSP12081 509 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 SNRPFP62306 86 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 KRT17Q04695 432 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 KCNB1Q14721 858 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 ENOX2Q16206 610 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 KMT5BQ4FZB7 885 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 DDX53Q86TM3 631 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 KIAA0895Q8NCT3 520 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 TMEM174Q8WUU8 243 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 TMEM169Q96HH4 297 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 ZMAT2Q96NC0 199 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 VN1R3Q9BXE9 311 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 TLR9Q9NR96 1032 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 EXOC1Q9NV70 894 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 PUF60Q9UHX1 559 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 AGO2Q9UKV8 859 aaKnown RBP15.66■□□□□ 0.1
COL3A1-203ENST00000450867 FAN1Q9Y2M0 1017 aa15.66■□□□□ 0.1
COL3A1-203ENST00000450867 NT5C1B-RDH14C9J2C7 533 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 TMEM189-UBE2V1I3L0A0 370 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 NR1I2O75469 434 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 CXCL8P10145 99 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 TNFSF9P41273 254 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 OSTNP61366 133 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 UBE2HP62256 183 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 STK4Q13043 487 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 ZBTB6Q15916 424 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 SEZ6Q53EL9 994 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 ZBTB41Q5SVQ8 909 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 CRELD2Q6UXH1 353 aaPredicted RBP15.65■□□□□ 0.1
COL3A1-203ENST00000450867 CD302Q8IX05 232 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 UROC1Q96N76 676 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 NSUN3Q9H649 340 aaKnown RBP15.65■□□□□ 0.1
COL3A1-203ENST00000450867 SLC38A7Q9NVC3 462 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 CGNQ9P2M7 1197 aaKnown RBP15.65■□□□□ 0.1
COL3A1-203ENST00000450867 IRAK3Q9Y616 596 aa15.65■□□□□ 0.1
COL3A1-203ENST00000450867 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 TGFB1I1O43294 461 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 LDHAP00338 332 aaKnown RBP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 IRS1P35568 1242 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 MATR3P43243 847 aaKnown RBP eCLIP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 ERVFC1P60507 584 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 HSP90AA2PQ14568 343 aaPredicted RBP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 C12orf56Q8IXR9 622 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 GPR65Q8IYL9 337 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 SYCP3Q8IZU3 236 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 POMGNT1Q8WZA1 660 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 COLEC11Q9BWP8 271 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 ZBP1Q9H171 429 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 ASB7Q9H672 318 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 SLC39A2Q9NP94 309 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 NGRNQ9NPE2 291 aaKnown RBP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 DERAQ9Y315 318 aa15.64■□□□□ 0.09
COL3A1-203ENST00000450867 MTCL1Q9Y4B5 1905 aaKnown RBP15.64■□□□□ 0.09
COL3A1-203ENST00000450867 SCN1AP35498 2009 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 CYP3A5P20815 502 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 OR1G1P47890 313 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 PPP2R3AQ06190 1150 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 SOX4Q06945 474 aaPredicted RBP15.63■□□□□ 0.09
COL3A1-203ENST00000450867 TPRNQ4KMQ1 711 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 GLRA4Q5JXX5 417 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 CCDC47Q96A33 483 aaKnown RBP15.63■□□□□ 0.09
COL3A1-203ENST00000450867 FBXL18Q96ME1 805 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 GSDMAQ96QA5 445 aa15.63■□□□□ 0.09
COL3A1-203ENST00000450867 PAAF1Q9BRP4 392 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms