RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 BORCS6Q96GS4 357 aa14.65□□□□□ -0.06
HMGB3-204ENST00000448905 UROC1Q96N76 676 aa14.65□□□□□ -0.06
HMGB3-204ENST00000448905 PDZD7Q9H5P4 517 aa14.65□□□□□ -0.06
HMGB3-204ENST00000448905 FBXW11Q9UKB1 542 aa14.65□□□□□ -0.06
HMGB3-204ENST00000448905 NUMBLQ9Y6R0 609 aa14.65□□□□□ -0.06
HMGB3-204ENST00000448905 ZFHX2Q9C0A1 2572 aaPredicted RBP14.65□□□□□ -0.06
HMGB3-204ENST00000448905 MED24O75448 989 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 RECQL4O94761 1208 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 KIF4AO95239 1232 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 OR52Z1P0C646 297 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 OR1D2P34982 312 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 ID4P47928 161 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 RBM25P49756 843 aaKnown RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 FOSBP53539 338 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 YARSP54577 528 aaKnown RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 HTR4Q13639 388 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 RAB33AQ14088 237 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 ZNF174Q15697 407 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 AXDND1Q5T1B0 1012 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 ERMP1Q7Z2K6 904 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 C1orf210Q8IVY1 113 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 C8orf76Q96K31 380 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 PAAF1Q9BRP4 392 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 RAB34Q9BZG1 259 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 TMEM60Q9H2L4 133 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 FOXP1Q9H334 677 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 TOPORSQ9NS56 1045 aaPredicted RBP14.64□□□□□ -0.07
HMGB3-204ENST00000448905 GDAQ9Y2T3 454 aa14.64□□□□□ -0.07
HMGB3-204ENST00000448905 PTGESO14684 152 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 JAK2O60674 1132 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 DCNP07585 359 aaKnown RBP14.63□□□□□ -0.07
HMGB3-204ENST00000448905 ELF1P32519 619 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 STARD6P59095 220 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 GPC5P78333 572 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 PDIA5Q14554 519 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 ANKS3Q6ZW76 656 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 FGF13Q92913 245 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 DDX27Q96GQ7 796 aaKnown RBP14.63□□□□□ -0.07
HMGB3-204ENST00000448905 BCO2Q9BYV7 579 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 LRWD1Q9UFC0 647 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 KCNG1Q9UIX4 513 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 KCNH3Q9ULD8 1083 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 NOL7Q9UMY1 257 aaKnown RBP14.63□□□□□ -0.07
HMGB3-204ENST00000448905 LIMCH1Q9UPQ0 1083 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 PHLPP2Q6ZVD8 1323 aa14.63□□□□□ -0.07
HMGB3-204ENST00000448905 CCL16O15467 120 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 POU2F2P09086 479 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 FGFR3P22607 806 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 CCT6AP40227 531 aaKnown RBP14.62□□□□□ -0.07
HMGB3-204ENST00000448905 TRAPPC10P48553 1259 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 GUCY1B3Q02153 619 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 PRKCQQ04759 706 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 SLC44A4Q53GD3 710 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 ATF7IP2Q5U623 682 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 POTEGQ6S5H5 508 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 PARM1Q6UWI2 310 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 SLC7A14Q8TBB6 771 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 NELL2Q99435 816 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 LLPHQ9BRT6 129 aaKnown RBP14.62□□□□□ -0.07
HMGB3-204ENST00000448905 TCHPQ9BT92 498 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 CCDC94Q9BW85 323 aaPredicted RBP14.62□□□□□ -0.07
HMGB3-204ENST00000448905 SLC38A7Q9NVC3 462 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 CACNG4Q9UBN1 327 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 DNM3Q9UQ16 869 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 BACE2Q9Y5Z0 518 aa14.62□□□□□ -0.07
HMGB3-204ENST00000448905 KANSL1LA0AUZ9 987 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 CCDC169A6NNP5 214 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 TMEM189-UBE2V1I3L0A0 370 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 WNT7AO00755 349 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 NCAM2O15394 837 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 LARGE1O95461 756 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 SNW1Q13573 536 aaKnown RBP14.61□□□□□ -0.07
HMGB3-204ENST00000448905 PABPC1LQ4VXU2 614 aaKnown RBP14.61□□□□□ -0.07
HMGB3-204ENST00000448905 RSPO2Q6UXX9 243 aaPredicted RBP14.61□□□□□ -0.07
HMGB3-204ENST00000448905 FAM184AQ8NB25 1140 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 PJA1Q8NG27 643 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 BSNDQ8WZ55 320 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 FGF14Q92915 247 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 CCDC113Q9H0I3 377 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 BHMT2Q9H2M3 363 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 GDE1Q9NZC3 331 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 MTRRQ9UBK8 725 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 KIAA1024Q9UPX6 916 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 TNFSF13BQ9Y275 285 aa14.61□□□□□ -0.07
HMGB3-204ENST00000448905 MRPS23Q9Y3D9 190 aaKnown RBP14.61□□□□□ -0.07
HMGB3-204ENST00000448905 RBM19Q9Y4C8 960 aaKnown RBP14.61□□□□□ -0.07
HMGB3-204ENST00000448905 SMIM28A0A1B0GU29 152 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 FAM170BA6NMN3 283 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 TTLL13PA6NNM8 815 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 H7C4K7 107 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 SP9P0CG40 484 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 PTPN2P17706 415 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
HMGB3-204ENST00000448905 CLCNKBP51801 687 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 NTHL1P78549 312 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 HMGN5P82970 282 aaKnown RBP14.6□□□□□ -0.07
HMGB3-204ENST00000448905 NAB2Q15742 525 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 UPP1Q16831 310 aa14.6□□□□□ -0.07
HMGB3-204ENST00000448905 TTC38Q5R3I4 469 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms