RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TBK1Q9UHD2 729 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 ANAPC7Q9UJX3 599 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PCDHB4Q9Y5E5 795 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 UBE4BO95155 1302 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 GTPBP10A4D1E9 387 aaKnown RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 GRAP2O75791 330 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 VTNP04004 478 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 ZNF286BP0CG31 522 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 ANXA13P27216 316 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 EMC2Q15006 297 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 KCNT1Q5JUK3 1230 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 B3GNT9Q6UX72 402 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 EPS8L1Q8TE68 723 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 ZBED3Q96IU2 234 aaPredicted RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 CPB2Q96IY4 423 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CCDC114Q96M63 670 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 MSTO1Q9BUK6 570 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 MTMR12Q9C0I1 747 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 ZNF302Q9NR11 478 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 RAB20Q9NX57 234 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CNOT8Q9UFF9 292 aaKnown RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 ODF2LQ9ULJ1 636 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 KIF13BQ9NQT8 1826 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 GOLGA8MH3BSY2 632 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 PGRMC1O00264 195 aaKnown RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 BCRP11274 1271 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CD19P15391 556 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CYP11B1P15538 503 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 UBA1P22314 1058 aaKnown RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 GUCY2CP25092 1073 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CTNNA1P35221 906 aaKnown RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 IFNAR2P48551 515 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 ZNF131P52739 623 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 RNF187Q5TA31 235 aaPredicted RBP8.98□□□□□ -0.97
CD44-208ENST00000428726 TAX1BP1Q86VP1 789 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CCDC105Q8IYK2 499 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 OLIG1Q8TAK6 271 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 NEK9Q8TD19 979 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 LPAR1Q92633 364 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 MKNK1Q9BUB5 465 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 MTFR1LQ9H019 292 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 MED4Q9NPJ6 270 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 TBC1D22BQ9NU19 505 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 DMAC2Q9NW81 257 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 CACNG4Q9UBN1 327 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 PCDHGC5Q9Y5F6 944 aa8.98□□□□□ -0.97
CD44-208ENST00000428726 SOWAHBA6NEL2 793 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 BTNL10A8MVZ5 291 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ACSL3O95573 720 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 GLRA2P23416 452 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 BRD2P25440 801 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 MAP3K10Q02779 954 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 CETN1Q12798 172 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 TTC31Q49AM3 519 aaPredicted RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 DCAF15Q66K64 600 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 CATSPERGQ6ZRH7 1159 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 MMS22LQ6ZRQ5 1243 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 IPO4Q8TEX9 1081 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 AENQ8WTP8 325 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 IFT74Q96LB3 600 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 HES2Q9Y543 173 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 CSADQ9Y600 493 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ZC3H4Q9UPT8 1303 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 VCANP13611 3396 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 PPP1R37O75864 691 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 HLA-DRAP01903 254 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ETS1P14921 441 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ATF7P17544 494 aaPredicted RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 PRKCIP41743 596 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 IRAK1P51617 712 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 RABGGTBP53611 331 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 RPL7AP62424 266 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 FMO1Q01740 532 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 STXBP2Q15833 593 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 TDRD10Q5VZ19 366 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 TTC27Q6P3X3 843 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 INTS8Q75QN2 995 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 IFT20Q8IY31 132 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ZNF564Q8TBZ8 553 aaPredicted RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 FBXO25Q8TCJ0 367 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 SLC7A3Q8WY07 619 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 DCPSQ96C86 337 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 NT5C1BQ96P26 610 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 FAM49AQ9H0Q0 323 aaPredicted RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 APOBEC3GQ9HC16 384 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 PSD3Q9NYI0 1048 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 RBAKQ9NYW8 714 aaPredicted RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 AGO2Q9UKV8 859 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 POLIQ9UNA4 740 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 NOVA2Q9UNW9 492 aaKnown RBP8.97□□□□□ -0.97
CD44-208ENST00000428726 SNCAIPQ9Y6H5 919 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 THAP12O43422 761 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 HCRTO43612 131 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 PSAPP07602 524 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ZSCAN5DPP0CG00 497 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 ADCY2Q08462 1091 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 IFFO1Q0D2I5 559 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 STRN3Q13033 797 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 LRRC14Q15048 493 aa8.97□□□□□ -0.97
CD44-208ENST00000428726 IFI16Q16666 785 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms