RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 IFI44Q8TCB0 444 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 NSUN6Q8TEA1 469 aaKnown RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 RGMAQ96B86 450 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 MIEF2Q96C03 454 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 SAMD11Q96NU1 681 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 TAAR9Q96RI9 348 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 VRK1Q99986 396 aaPredicted RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 MRI1Q9BV20 369 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 LSM14BQ9BX40 385 aaKnown RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 CD248Q9HCU0 757 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 HECAQ9UBI9 543 aaPredicted RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 GOLGA6CA6NDK9 693 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 GOLGA6BA6NDN3 693 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 LRRC14BA6NHZ5 514 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 VSTM5A8MXK1 200 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 FTLP02792 175 aaPredicted RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 SNRPA1P09661 255 aaKnown RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 GOLGA6DP0CG33 693 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 ATP5JP18859 108 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 ZNF280AP59817 542 aaPredicted RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 RAP2BP61225 183 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 CCDC157Q569K6 752 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 THEMIS2Q5TEJ8 643 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 SPTY2D1Q68D10 685 aaPredicted RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 DOK3Q7L591 496 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 RNF169Q8NCN4 708 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 MDGA1Q8NFP4 955 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 TTC8Q8TAM2 541 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 ATXN2LQ8WWM7 1075 aaKnown RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 C1GALT1C1Q96EU7 318 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 FAM89AQ96GI7 184 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 MRGPRX4Q96LA9 322 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 C8orf49Q96NF6 230 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 WWC2-AS2Q96NR7 200 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 ADOQ96SZ5 270 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 ACO2Q99798 780 aaKnown RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 MYOCQ99972 504 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 CPEB1Q9BZB8 566 aaKnown RBP5.33□□□□□ -1.56
USP40-204ENST00000427947 SPON1Q9HCB6 807 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 KMT5AQ9NQR1 393 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 GOLGA6AQ9NYA3 693 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 TCAF1Q9Y4C2 921 aa5.33□□□□□ -1.56
USP40-204ENST00000427947 TBKBP1A7MCY6 615 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 PJA2O43164 708 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 ALDH2P05091 517 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 MYBP10242 640 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 HIBADHP31937 336 aaKnown RBP5.32□□□□□ -1.56
USP40-204ENST00000427947 MAP2K6P52564 334 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 CLRN1P58418 232 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 CTXN1P60606 82 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 CREMQ03060 361 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 TLE1Q04724 770 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 ATP2B3Q16720 1220 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 GFOD2Q3B7J2 385 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 KHDC1Q4VXA5 237 aaKnown RBP5.32□□□□□ -1.56
USP40-204ENST00000427947 ARHGAP29Q52LW3 1261 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 HSP90AB2PQ58FF8 381 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 OTUD7BQ6GQQ9 843 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 MAMDC4Q6UXC1 1216 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 Q6ZSN1 163 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 PLXDC1Q8IUK5 500 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 GSPT2Q8IYD1 628 aaKnown RBP5.32□□□□□ -1.56
USP40-204ENST00000427947 DCBLD1Q8N8Z6 715 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 ZBTB34Q8NCN2 500 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 TFAP2CQ92754 450 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 PGBD4Q96DM1 585 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 DMRTA2Q96SC8 542 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 C11orf54Q9H0W9 315 aaPredicted RBP5.32□□□□□ -1.56
USP40-204ENST00000427947 SMPD4Q9NXE4 827 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 SLC23A1Q9UHI7 598 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 CNOT11Q9UKZ1 510 aaKnown RBP5.32□□□□□ -1.56
USP40-204ENST00000427947 JAG2Q9Y219 1238 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 POLHQ9Y253 713 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 PCDHA3Q9Y5H8 950 aa5.32□□□□□ -1.56
USP40-204ENST00000427947 ERC2O15083 957 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 SLC16A6O15403 523 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 CYP27B1O15528 508 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 CTNND1O60716 968 aaKnown RBP5.31□□□□□ -1.56
USP40-204ENST00000427947 SELENOPP49908 381 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 NOGQ13253 232 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 CRHR2Q13324 411 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 BMT2Q1RMZ1 405 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 ATXN7L2Q5T6C5 722 aaPredicted RBP5.31□□□□□ -1.56
USP40-204ENST00000427947 EFCAB12Q6NXP0 572 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 ZNF529Q6P280 563 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 SEM1Q6ZVN7 128 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 GPRIN1Q7Z2K8 1008 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 UBE3BQ7Z3V4 1068 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 DENND1CQ8IV53 801 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 TTC9BQ8N6N2 239 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 C3orf20Q8ND61 904 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 OR52N2Q8NGI0 321 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 RUNDC1Q96C34 613 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 CGRRF1Q99675 332 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 GPR87Q9BY21 358 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 MAN1C1Q9NR34 630 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 CALCOCO1Q9P1Z2 691 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 NR2E3Q9Y5X4 410 aa5.31□□□□□ -1.56
USP40-204ENST00000427947 PNPLA7Q6ZV29 1317 aa5.3□□□□□ -1.56
USP40-204ENST00000427947 TCRBV7S2A1N4TA0A589 114 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms