RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SLC39A11Q8N1S5 342 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 MICALL1Q8N3F8 863 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 BCL7CQ8WUZ0 217 aaPredicted RBP13.62□□□□□ -0.23
SKA1-203ENST00000417656 POMGNT1Q8WZA1 660 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 ERCC4Q92889 916 aaPredicted RBP13.62□□□□□ -0.23
SKA1-203ENST00000417656 P2RX5Q93086 422 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 CCDC47Q96A33 483 aaKnown RBP13.62□□□□□ -0.23
SKA1-203ENST00000417656 TIGD1Q96MW7 591 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 ACAP3Q96P50 834 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 GBP4Q96PP9 640 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 TMEM206Q9H813 350 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 ALG13Q9NP73 1137 aaKnown RBP13.62□□□□□ -0.23
SKA1-203ENST00000417656 TOPORSQ9NS56 1045 aaPredicted RBP13.62□□□□□ -0.23
SKA1-203ENST00000417656 CACNG4Q9UBN1 327 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 STYXL1Q9Y6J8 313 aa13.62□□□□□ -0.23
SKA1-203ENST00000417656 CASTOR2A6NHX0 329 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 CLTAP09496 248 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 ADSSP30520 456 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 BMT2Q1RMZ1 405 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 SLFN12LQ6IEE8 588 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 COLGALT2Q8IYK4 626 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 ZNF507Q8TCN5 953 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 CBWD1Q9BRT8 395 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 TMEM175Q9BSA9 504 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 SPG21Q9NZD8 308 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 AGO2Q9UKV8 859 aaKnown RBP13.61□□□□□ -0.23
SKA1-203ENST00000417656 STXBP5LQ9Y2K9 1186 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 PRG3Q9Y2Y8 225 aaPredicted RBP13.61□□□□□ -0.23
SKA1-203ENST00000417656 MTCH2Q9Y6C9 303 aa13.61□□□□□ -0.23
SKA1-203ENST00000417656 F8W810 466 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 RHOBTB3O94955 611 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 THP07101 528 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 GALTP07902 379 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 DNAJB1P25685 340 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 OR1G1P47890 313 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 ALDH7A1P49419 539 aaKnown RBP13.6□□□□□ -0.23
SKA1-203ENST00000417656 ACOT2P49753 483 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 PSMD2Q13200 908 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 TUSC3Q13454 348 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 KCNB1Q14721 858 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 NAB2Q15742 525 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 ENOX2Q16206 610 aaKnown RBP13.6□□□□□ -0.23
SKA1-203ENST00000417656 SLC10A6Q3KNW5 377 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 XKR4Q5GH76 650 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 ARMCX5Q6P1M9 558 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 ZSWIM2Q8NEG5 633 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 SPPL3Q8TCT6 385 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 POF1BQ8WVV4 589 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 RABGGTAQ92696 567 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 SAAL1Q96ER3 474 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 ZMAT2Q96NC0 199 aaKnown RBP13.6□□□□□ -0.23
SKA1-203ENST00000417656 PPP1R10Q96QC0 940 aaKnown RBP13.6□□□□□ -0.23
SKA1-203ENST00000417656 LMAN2LQ9H0V9 348 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 MARCH5Q9NX47 278 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 CNTN3Q9P232 1028 aa13.6□□□□□ -0.23
SKA1-203ENST00000417656 CPSF3Q9UKF6 684 aaKnown RBP13.6□□□□□ -0.23
SKA1-203ENST00000417656 SMIM28A0A1B0GU29 152 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 GOLGA8IPA6NC78 632 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 GOLGA8JA6NMD2 632 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 NRP1O14786 923 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 TGFB1I1O43294 461 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 KCNE1P15382 129 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 GARTP22102 1010 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PLCB3Q01970 1234 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PPP2R3AQ06190 1150 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 SPAG1Q07617 926 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 KYAT1Q16773 422 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PTPROQ16827 1216 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 ALKAL1Q6UXT8 129 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 NOC3LQ8WTT2 800 aaKnown RBP13.59□□□□□ -0.23
SKA1-203ENST00000417656 SMARCE1Q969G3 411 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 MRPL38Q96DV4 380 aaKnown RBP13.59□□□□□ -0.23
SKA1-203ENST00000417656 TMEM169Q96HH4 297 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 IGSF21Q96ID5 467 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PAAF1Q9BRP4 392 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 FAM213AQ9BRX8 229 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PCIF1Q9H4Z3 704 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 RPF1Q9H9Y2 349 aaKnown RBP13.59□□□□□ -0.23
SKA1-203ENST00000417656 GOLGA2P5Q9HBQ8 144 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 AGPAT3Q9NRZ7 376 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 HOOK1Q9UJC3 728 aaKnown RBP13.59□□□□□ -0.23
SKA1-203ENST00000417656 FAN1Q9Y2M0 1017 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PCDHGC5Q9Y5F6 944 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PCDHA5Q9Y5H7 936 aa13.59□□□□□ -0.23
SKA1-203ENST00000417656 PRRC2BQ5JSZ5 2229 aaKnown RBP13.59□□□□□ -0.23
SKA1-203ENST00000417656 TTC26A0AVF1 554 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 LACTBL1A8MY62 500 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 SMC2O95347 1197 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 POU3F3P20264 500 aaPredicted RBP13.58□□□□□ -0.24
SKA1-203ENST00000417656 IRS1P35568 1242 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 UBE3AQ05086 875 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 SOX4Q06945 474 aaPredicted RBP13.58□□□□□ -0.24
SKA1-203ENST00000417656 CAMK1Q14012 370 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 KNOP1Q1ED39 458 aaKnown RBP13.58□□□□□ -0.24
SKA1-203ENST00000417656 TIGD5Q53EQ6 642 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 CRELD2Q6UXH1 353 aaPredicted RBP13.58□□□□□ -0.24
SKA1-203ENST00000417656 HS2ST1Q7LGA3 356 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 SMYD4Q8IYR2 804 aaPredicted RBP13.58□□□□□ -0.24
SKA1-203ENST00000417656 TMEM130Q8N3G9 435 aa13.58□□□□□ -0.24
SKA1-203ENST00000417656 MAFAQ8NHW3 353 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms