RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PACSIN1Q9BY11 444 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 STX4Q12846 297 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 CBFBQ13951 182 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 DGKHQ86XP1 1220 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PNMA1Q8ND90 353 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 RMND5BQ96G75 393 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 MARK3P27448 753 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ZCWPW1Q9H0M4 648 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 HIST1H2AGP0C0S8 130 aaPredicted RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 ACADSP16219 412 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 HIST1H2ADP20671 130 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 GSTA3Q16772 222 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 HIST1H2AHQ96KK5 128 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 HIST1H2AJQ99878 128 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 H2AFJQ9BTM1 129 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ADGRA2Q96PE1 1338 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF862O60290 1169 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ARF4P18085 180 aaPredicted RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 MB21D1Q8N884 522 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 C8orf58Q8NAV2 365 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 MSTO1Q9BUK6 570 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 CTNNAL1Q9UBT7 734 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 PPP6R2O75170 966 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 SETD3Q86TU7 594 aaPredicted RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 PRPF39Q86UA1 669 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 LRRC47Q8N1G4 583 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 ASAP3Q8TDY4 903 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 PLEKHA5Q9HAU0 1116 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 STK39Q9UEW8 545 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 RIMS2Q9UQ26 1411 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 WARSP23381 471 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 KCTD2Q14681 263 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 TRPM8Q7Z2W7 1104 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 BNIPLQ7Z465 357 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 WNK4Q96J92 1243 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 CARD14Q9BXL6 1004 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 SYNDIG1Q9H7V2 258 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 A0A1W2PQ27 194 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 A0A1W2PQ64 194 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 A0A1W2PQD8 194 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 FAM47E-STBD1D6RA91 191 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 APOL1O14791 398 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 CLIC2O15247 247 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 MYBL1P10243 752 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 RAD51Q06609 339 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ANKRD40Q6AI12 368 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 CDKL3Q8IVW4 592 aaPredicted RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 WDR11Q9BZH6 1224 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 BFARQ9NZS9 450 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 DARSP14868 501 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 PCIF1Q9H4Z3 704 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 C19orf44Q9H6X5 657 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ANXA11P50995 505 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 KIZQ2M2Z5 673 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 MFSD14BQ5SR56 506 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 ULK3Q6PHR2 472 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 DSTYKQ6XUX3 929 aa14□□□□□ -0.17
CCDC88A-204ENST00000413716 DDX50Q9BQ39 737 aaKnown RBP14□□□□□ -0.17
CCDC88A-204ENST00000413716 NESP48681 1621 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 UHRF1BP1Q6BDS2 1440 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 SMAPO00193 183 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 DPYSL4O14531 572 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 OSBPP22059 807 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 GYS2P54840 703 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 BTN3A2P78410 334 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ICA1Q05084 483 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ADCK2Q7Z695 626 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 SMYD4Q8IYR2 804 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CMTR1Q8N1G2 835 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 RERGLQ9H628 205 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 VAV3Q9UKW4 847 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PPP2R3BQ9Y5P8 575 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 AATKQ6ZMQ8 1374 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CTCFP49711 727 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 KCNK10P57789 538 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF699Q32M78 642 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ZCWPW2Q504Y3 356 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 COBLL1Q53SF7 1204 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 VN1R5Q7Z5H4 357 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ZBTB40Q9NUA8 1239 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 KLHL3Q9UH77 587 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 SH3TC1Q8TE82 1336 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 E9PBE3 544 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CHSY1Q86X52 802 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 VSTM4Q8IW00 320 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CLIC6Q96NY7 704 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 ADAM22Q9P0K1 906 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CDY2AQ9Y6F7 541 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 CDY1Q9Y6F8 540 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 F5H423 210 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PFKFB2O60825 505 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PGM3O95394 542 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 C1orf131Q8NDD1 294 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 WNT8AQ9H1J5 351 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PCDHA4Q9UN74 947 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 SNAPC4Q5SXM2 1469 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 RGS12O14924 1447 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 PRR23AA6NEV1 266 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 E7ENQ6 273 aa13.99□□□□□ -0.17
CCDC88A-204ENST00000413716 EFHC2Q5JST6 749 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms