RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 PRDM10Q9NQV6 1147 aa16.09■□□□□ 0.17
CBX3-202ENST00000396386 DMGDHQ9UI17 866 aaKnown RBP16.09■□□□□ 0.17
CBX3-202ENST00000396386 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
CBX3-202ENST00000396386 NOC2LQ9Y3T9 749 aaKnown RBP16.09■□□□□ 0.17
CBX3-202ENST00000396386 PTPRJQ12913 1337 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 ZBTB42B2RXF5 422 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 MMEP08473 750 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 MYBL2P10244 700 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 CETPP11597 493 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 KRT5P13647 590 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 WNT7BP56706 349 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 LAMTOR4Q0VGL1 99 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 ARMCX2Q7L311 632 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 AENQ8WTP8 325 aaKnown RBP16.08■□□□□ 0.17
CBX3-202ENST00000396386 COPS5Q92905 334 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.08■□□□□ 0.17
CBX3-202ENST00000396386 C2orf40Q9H1Z8 148 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 CTTNBP2NLQ9P2B4 639 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 TRPC6Q9Y210 931 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 CLEC11AQ9Y240 323 aa16.08■□□□□ 0.17
CBX3-202ENST00000396386 IGKV6-21A0A0C4DH24 114 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 PRKCBP05771 671 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 HARSP12081 509 aaKnown RBP16.08■□□□□ 0.16
CBX3-202ENST00000396386 SLC7A5Q01650 507 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 ZBTB41Q5SVQ8 909 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 RASGEF1CQ8N431 466 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 FAM84AQ96KN4 292 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 KRT12Q99456 494 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 TMEM59LQ9UK28 342 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 COG5Q9UP83 839 aa16.08■□□□□ 0.16
CBX3-202ENST00000396386 DIS3Q9Y2L1 958 aaKnown RBP16.08■□□□□ 0.16
CBX3-202ENST00000396386 FAM170AA1A519 330 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 PDHXO00330 501 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 CLDN3O15551 220 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 MSCO60682 206 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 MTA2O94776 668 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 RNASE9P60153 205 aaKnown RBP16.07■□□□□ 0.16
CBX3-202ENST00000396386 MKRN4PQ13434 485 aaPredicted RBP16.07■□□□□ 0.16
CBX3-202ENST00000396386 BRSK2Q8IWQ3 736 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 LRRC71Q8N4P6 559 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 RNF149Q8NC42 400 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 ELMO3Q96BJ8 720 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 ACP6Q9NPH0 428 aa16.07■□□□□ 0.16
CBX3-202ENST00000396386 CNTNAP2Q9UHC6 1331 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 HBP1O60381 514 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 TOM1L1O75674 476 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 HEXIM1O94992 359 aaKnown RBP16.06■□□□□ 0.16
CBX3-202ENST00000396386 VNN1O95497 513 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 GTF2A2P52657 109 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 EPHB4P54760 987 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 MRPS25P82663 173 aaKnown RBP16.06■□□□□ 0.16
CBX3-202ENST00000396386 TFDP1Q14186 410 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 MAPK6Q16659 721 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 IFT20Q8IY31 132 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 DDX1Q92499 740 aaKnown RBP16.06■□□□□ 0.16
CBX3-202ENST00000396386 ZNF653Q96CK0 615 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 VTA1Q9NP79 307 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 PDGFCQ9NRA1 345 aa16.06■□□□□ 0.16
CBX3-202ENST00000396386 CCL15-CCL14A0A0B4J2E2 113 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 H3BQF6 201 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 CCDC188H7C350 402 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 DDX3YO15523 660 aaKnown RBP16.05■□□□□ 0.16
CBX3-202ENST00000396386 SRGAP2CP0DJJ0 459 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 AP3M2P53677 418 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ARHGAP1Q07960 439 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 GRM1Q13255 1194 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 CCL15Q16663 113 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ZNF792Q3KQV3 632 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ZNF677Q86XU0 584 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 CARD9Q9H257 536 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 GTF3C4Q9UKN8 822 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 HPCAL4Q9UM19 191 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ANK1P16157 1881 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ZNF236Q9UL36 1845 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 MIF4GDA9UHW6 222 aaKnown RBP16.05■□□□□ 0.16
CBX3-202ENST00000396386 CYP1A2P05177 515 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ADORA2AP29274 412 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 GCLCP48506 637 aaPredicted RBP16.05■□□□□ 0.16
CBX3-202ENST00000396386 BPIFB4P59827 614 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 CUL2Q13617 745 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 CLEC16AQ2KHT3 1053 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 RHPN2Q8IUC4 686 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 KLHL7Q8IXQ5 586 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ABRAQ8N0Z2 381 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 TRAPPC12Q8WVT3 735 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ACO2Q99798 780 aaKnown RBP16.05■□□□□ 0.16
CBX3-202ENST00000396386 TCHPQ9BT92 498 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 GDF3Q9NR23 364 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 ERAP1Q9NZ08 941 aa16.05■□□□□ 0.16
CBX3-202ENST00000396386 TTC7AQ9ULT0 858 aaPredicted RBP16.05■□□□□ 0.16
CBX3-202ENST00000396386 TTLL13PA6NNM8 815 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 BTBD19C9JJ37 291 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 OGTO15294 1046 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 POLR3GO15318 223 aaPredicted RBP16.04■□□□□ 0.16
CBX3-202ENST00000396386 ATMINO43313 823 aaPredicted RBP16.04■□□□□ 0.16
CBX3-202ENST00000396386 FAM189A1O60320 539 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 PHACTR2O75167 634 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 CLSTN1O94985 981 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 GH1P01241 217 aa16.04■□□□□ 0.16
CBX3-202ENST00000396386 TBXAS1P24557 533 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms